BAC Information

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BAC

Clone NameMSMg01-436M11
Chromosome6 (Build37)
Map Location 111,693,285 - 111,877,818
singlet/doubletdoublet
Overlap genenone
Upstream geneGrm7
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975, Cav3, Oxtr, LOC434076, EG434077, Rad18, Srgap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436M11.T7 (MSMg01no436_m11.b1)MSMg01-436M11.TJ (MSMg01no436_m11.g1)
ACCAG527765AG527766
length722728
length of high quality
(start - end)
556 (77 - 632)321 (326 - 646)
definitionCHROMAT_FILE: MSMg01no436_m11.b1 PHD_FILE: MSMg01no436_m11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:57 2005CHROMAT_FILE: MSMg01no436_m11.g1 PHD_FILE: MSMg01no436_m11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,877,263 - 111,877,818)(111,693,285 - 111,693,605)
sequence
NNNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCATCATTAACACAAATTCTAGTTGAACATGAAATGGTC
TCAACAAGAATATGAACTGGAAGAGTCTCTTTACTGTCTTGCCACCTTAC
GTTGAATGGACCAAATGACCTAGATGGTAAGTTCTGTCATGAGACTAAGG
TTCAATGAAGATCAAACTCTTCCTAGAATTTATTCTATCTTGAGGATTTT
TGGCTGATCCTTGACTCCTGTGCCACCCAGTAGAGACAGGGAGCACCACT
AATATCTCAGTCTCTCCCTAGCTTTTATAGAATGCAATTCCAAGATGGGT
CTGTATTTCCAGAATTATCCTTCTTATGGTGGAGAATATTCGAGAGTCTT
AGGCTCAAATCAATCCAAAATCTTAGGTGATTTTGAAAGAACACAGAATC
ATCAGTATAGTGTTATCTGTAGAAATATATGGACAGAAACTTGAGATATG
CTGTGATACGTGTAGCTAATTAAAACAATATTCATGTTTTATATAAAATG
TTATACTTTTCCATTGCTGATAGGAATGAAAATATGTACAACCATTCTGG
AAATCAATTTGGCTATTTCTCATAAAATTGGGATCAGTCCTAACTAAATA
CCCACTCCATTCTACTCCTGAACATATACCTATAATATGCTCCACCATAC
CACAAGGATATTTGTTTCCCTA
NCCACGATGATATGGGTAGCCTGGCGGNCGCCTGGTTTCAAACATGAGGT
GACCTATAGAAGTACCGCGAAGTTCATTCCTGATCTGAAAGAGTAAACTC
GGCTGATTTTAAAATTTATGATCACAAGCAGTAAGATCAATTTCATACAC
ATCGGAGACTCTGTAAGACTGAGATAAATGCTTTACTTGTCCAGACACTC
CCTATAGAGCAAACCTTATGTATTCTTGAAGCAGCTAAAAATGTTGAAAC
AAAAACATGTGAGCCACAAAGAGTTAAAAAATAATGACAAGCACACAATG
ACTAACTGGACCCAACAAATGTTTGCTTCAGAGTCAAGGATGATGAAAGG
GGACATGGTAAGCAAGGATGGGGCTTCTGATGTTGGCAGTCACTGCTCCA
CTCTGGTGAGTCTTGCCATTTAGCAACATGACCAAAGTTATAAACTCTTT
CAAGTTCAAGCAGATATTATAGCTATTTCAGGCTAATTTCCCTCCTATTA
GGAGATGGTGGATACCTCCTTACACCTTGGGAAGCAGAAGCCTTAAAGAT
AGCATTGGGGGATATGCAGCTAGAAGTGTCCACCGTGTGTAGCCAGGCAG
GGCTCCCCAGTGGAGAGAAAAGGACAATAATCCACCCACAAAACTTTTAA
CCCACAATGTGTCCTGCTTACAAGATATGCAGGGACAAAGATAGAGCAGA
GATGGAGGGAATGGCCAACCAATGACTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_m11.b1 MSMg01no436_m11.b1 CHROMAT_FILE:
MSMg01no436_m11.b1 PHD_FILE: MSMg01no436_m11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:57 2005
         (556 letters)



>mm_chr6_111877143_111878098
          Length = 956

 Score =  967 bits (500), Expect = 0.0
 Identities = 542/556 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctagttgaacatgaaatggtctcaacaagaatatgaactggaagagtctctttactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 attctagttgaacatgaaatggtctcaacaagaatatgaactggaagagtctctttactg 617

                                                                       
Query: 61  tcttgccaccttacgttgaatggaccaaatgacctagatggtaagttctgtcatgagact 120
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 616 tcttgccacattacgttgaatggaccaaataacctagatggtaagttctgtcatgagact 557

                                                                       
Query: 121 aaggttcaatgaagatcaaactcttcctagaatttattctatcttgaggatttttggctg 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 556 atggttcaatgaagatcaaactcttcctagaatttattctatcttgaggatttttggctt 497

                                                                       
Query: 181 atccttgactcctgtgccacccagtagagacagggagcaccactaatatctcagtctctc 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 496 atccttgactcctgtgccacccagtagagacagggagccccactaatatctcagtctctc 437

                                                                       
Query: 241 cctagcttttatagaatgcaattccaagatgggtctgtatttccagaattatccttctta 300
           |||| |   || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cctaacccatagagaatgcaattccaagatgggtctgtatttccagaattatccttctta 377

                                                                       
Query: 301 tggtggagaatattcgagagtcttaggctcaaatcaatccaaaatcttaggtgattttga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tggtggagaatattcgagagtcttaggctcaaatcaatccaaaatcttaggtgattttga 317

                                                                       
Query: 361 aagaacacagaatcatcagtatagtgttatctgtagaaatatatggacagaaacttgaga 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 316 aagaacacagaatcatcagtatagcgttatctgtagaaatatatggacagaaacttgaga 257

                                                                       
Query: 421 tatgctgtgatacgtgtagctaattaaaacaatattcatgttttatataaaatgttatac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tatgctgtgatacgtgtagctaattaaaacaatattcatgttttatataaaatgttatac 197

                                                                       
Query: 481 ttttccattgctgataggaatgaaaatatgtacaaccattctggaaatcaatttggctat 540
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 196 tcttccattgctgataggaatgaaaatatgtacaaccattctggaaatcaatttggttat 137

                           
Query: 541 ttctcataaaattggg 556
           |||||| |||||||||
Sbjct: 136 ttctcagaaaattggg 121


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no436_m11.g1 MSMg01no436_m11.g1 CHROMAT_FILE:
MSMg01no436_m11.g1 PHD_FILE: MSMg01no436_m11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:57 2005
         (321 letters)



>mm_chr6_111693085_111693805
          Length = 721

 Score =  590 bits (305), Expect = e-173
 Identities = 317/321 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagagtcaaggatgatgaaaggggacatggtaagcaaggatggggcttctgatgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagagtcaaggatgatgaaaggggacatggtaagcaaggatggggcttctgatgttg 260

                                                                       
Query: 61  gcagtcactgctccactctggtgagtcttgccatttagcaacatgaccaaagttataaac 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gcagtcactgctccactctggtgagtcttgccgtttagcaacatgaccaaagttataaac 320

                                                                       
Query: 121 tctttcaagttcaagcagatattatagctatttcaggctaatttccctcctattaggaga 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tctttcaagttcaagcagatattatagctatttcaggcttatttccctcctattaggaga 380

                                                                       
Query: 181 tggtggatacctccttacaccttgggaagcagaagccttaaagatagcattgggggatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 tggtggatacctccttacaccttgggaagcagaagccttaaagatagcattggcggatat 440

                                                                       
Query: 241 gcagctagaagtgtccaccgtgtgtagccaggcagggctccccagtggagagaaaaggac 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 gcagctagaagtgtccaccgtgtgtagccaggcaggactccccagtggagagaaaaggac 500

                                
Query: 301 aataatccacccacaaaactt 321
           |||||||||||||||||||||
Sbjct: 501 aataatccacccacaaaactt 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)