Query= MSMg01no436_o12.b1 MSMg01no436_o12.b1 CHROMAT_FILE:
MSMg01no436_o12.b1 PHD_FILE: MSMg01no436_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:06 2005
(486 letters)
>mm_chr6_92450240_92451125
Length = 886
Score = 851 bits (440), Expect = 0.0
Identities = 459/466 (98%), Gaps = 2/466 (0%)
Strand = Plus / Plus
Query: 23 ccctatgtgagctgaaatgtctcaataagtctgtcccaagagttctgcagaatttttcat 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 ccctatgtgagctgaaatgtctcaataagtctgtcccaagagttctgcagaatttttcat 282
Query: 83 tttctctggccaagccatctgctttgatggttaggtgctgggagttctccccaacggcat 142
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 283 tttctctggccaagccatctgctttgatggttaggtgctgtgagttctccccaacggcat 342
Query: 143 gggacacctgatcttgttcagcaccaccaggccccctgctgaaaattcagatctatgggc 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gggacacctgatcttgttcagcaccaccaggccccctgctgaaaattcagatctatgggc 402
Query: 203 ttcccctccttcaagaccttctgaatctgccctctaggtatggaactcagccactgaagt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ttcccctccttcaagaccttctgaatctgccctctaggtatggaactcagccactgaagt 462
Query: 263 ctgtgcatgtcctcttgtgattctgcatataaccaccattggccaaaaagaagaagagag 322
|||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 463 ctgtgcatgtcctccagggattctgcatatagccaccattggccaaaaagaagaagagag 522
Query: 323 cgagcaaaggtaggagggtagagaagcctctaacgggttctgtatggtcagctgatgcct 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cgagcaaaggtaggagggtagagaagcctctaacgggttctgtatggtcagctgatgcct 582
Query: 383 ttcacatgaaatctgacccacacttgagttgt--actgggttcacattagagaccagtaa 440
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 583 ttcacatgaaatctgacccacacttgagttgtttactgggttcacattagagaccagtaa 642
Query: 441 acagtgtgatgcaagtgccaagaagcaggtgtgtgtgaggttttgg 486
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acagtgtgatgcaagtgccaagaagcaggtgtgtgtgaggttttgg 688
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_o12.g1 MSMg01no436_o12.g1 CHROMAT_FILE:
MSMg01no436_o12.g1 PHD_FILE: MSMg01no436_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:06 2005
(324 letters)
>mm_chr6_92592590_92593312
Length = 723
Score = 603 bits (312), Expect = e-177
Identities = 321/324 (99%), Gaps = 1/324 (0%)
Strand = Plus / Minus
Query: 1 attactcccttgcattgagttctccatatggtattcactctgttccaagtctgtctttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 attactcccttgcattgagttctccatatggtattcactctgttccaagtctgtctttgc 464
Query: 61 tgttacccagggtatacctggatttggttccaggcttggctcacttgtcatcttctgtga 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgttacccaggatatacctggatttggttccaggcttggctcacttgtcatcttctgtga 404
Query: 121 tggtcttcctgaaagatgtcactcttctaagttcccttagcatccagggaaggctaccct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tggtcttcctgaaagatgtcactcttctaagttcccttagcatccagggaaggctaccct 344
Query: 181 gattctctttaagtctttggtgatgtaaacgttgacaactactctgtctttcagactgtc 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ga-gctctttaagtctttggtgatgtaaacgttgacaactactctgtctttcagactgtc 285
Query: 241 aaatgtgggtgacaggttgatcgttctcagaggatatagaaattctagaatttattggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aaatgtgggtgacaggttgatcgttctcagaggatatagaaattctagaatttattggca 225
Query: 301 tcctggtgccttatgagatggagg 324
||||||||||||||||||||||||
Sbjct: 224 tcctggtgccttatgagatggagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space: 224910
Effective search space used: 224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
