Query= MSMg01no436_p20.b1 MSMg01no436_p20.b1 CHROMAT_FILE:
MSMg01no436_p20.b1 PHD_FILE: MSMg01no436_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:12 2005
(334 letters)
>mm_chr6_52803079_52803813
Length = 735
Score = 574 bits (297), Expect = e-168
Identities = 321/329 (97%), Gaps = 1/329 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatgttgctttcctactatatagagatagactctagatacacttcatctggact 63
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatgttgcaaacatactatatagagatagactctagatacacttcatctggact 263
Query: 64 gctaagataaatgcagtttgccagatgaaacacttgatgtagactctggagccatagtat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctaagataaatgcagtttgccagatgaaacacttgatgtagactctggagccatagtat 323
Query: 124 tctgctcgaatatctcatctgggggaaaaaaaa-ctattctacagaaactgtaaagttca 182
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 324 tctgctcgaatatctcatctggggaaaaaaaaacctattctacagaaactgtaaagttca 383
Query: 183 aaattgatttgaataaattaaatatataggctattggcctgcaatctaagacctgagagt 242
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 aaattgatttgaataaattaaatatataggctattggtctgcaatctaagacctgagagt 443
Query: 243 gtgaaaccacaggagggacacagggctttgggttatgaaaaagtagaagaggaggaagag 302
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 gtgaaaccacaggagggacacagggctttgggttaggaaaaagtagaagaggaggaagag 503
Query: 303 gaagaagaggaggaagaggaggaggagcc 331
|||||||||||||||||||||||||||||
Sbjct: 504 gaagaagaggaggaagaggaggaggagcc 532
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 735
Length adjustment: 9
Effective length of query: 325
Effective length of database: 726
Effective search space: 235950
Effective search space used: 235950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_p20.g1 MSMg01no436_p20.g1 CHROMAT_FILE:
MSMg01no436_p20.g1 PHD_FILE: MSMg01no436_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:13 2005
(488 letters)
>mm_chr6_52965056_52965943
Length = 888
Score = 897 bits (464), Expect = 0.0
Identities = 482/488 (98%)
Strand = Plus / Minus
Query: 1 ttgtagtgggataacagtagggacattttctgactactgtgtctggcacctaggtcattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttgtagtgggataacagtagggacattttctgactactgtgtctggcacctaggtcattg 736
Query: 61 tctagcaaataataagtatgcaacaaacatgtgttgcatgagtaagtgaaagtgaggcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tctagcaaataataagtatgcaacaaacatgtgttgcatgagtaagtgaaagtgaggcaa 676
Query: 121 aaggccaccatttataggagtcgtgaggaggctgggaggtctatgaatggggtgcatcta 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 675 aaggccaccatttataggagtcgcgaggaggctgggaggtctatgaatggggtgcatcta 616
Query: 181 ctaagaaacccagatctggcagcttgacactcaggagatacagtgacttagggttctgtt 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 615 caaagaaacccagatctggcagcttgacactcaggagatacagtgacttagggttttgtt 556
Query: 241 gttgtggcatgtataaatatttatttgggaaaccaagaagccaaagatgagagtaaagac 300
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gttgtggcaagtaaaaatatttatttgggaaaccaagaagccaaagatgagagtaaagac 496
Query: 301 caccctcttgtgctctgcagtgataaaggacttaatggggagaaaagaaaagcaggtgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 caccctcttgtgctctgcagtgataaaggacttaatggggagaaaagaaaagcaggtgct 436
Query: 361 gaggcccatgggctctacacggtgagcctgaaatgggacatcgagattcacattggtctt 420
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 435 gaggcccatgggctctacacggtgagcctgaaatgggacatcaagattcacattggtctt 376
Query: 421 aagtgcaatcccctagttcagtctcccggatttatttctaaactgacagcatcatccatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aagtgcaatcccctagttcagtctcccggatttatttctaaactgacagcatcatccatc 316
Query: 481 tcccgtgg 488
||||||||
Sbjct: 315 tcccgtgg 308
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space: 419684
Effective search space used: 419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
