BAC Information

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BAC

Clone NameMSMg01-437A09
Chromosome6 (Build37)
Map Location 87,811,072 - 87,811,563
singlet/doubletsinglet
Overlap genenone
Upstream geneAak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp
Downstream geneCopg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-437A09.T7 (MSMg01no437_a09.b1)MSMg01-437A09.TJ (MSMg01no437_a09.g1)
ACCAG527953AG527954
length755753
length of high quality
(start - end)
246 (78 - 323)492 (76 - 567)
definitionCHROMAT_FILE: MSMg01no437_a09.b1 PHD_FILE: MSMg01no437_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:15 2005CHROMAT_FILE: MSMg01no437_a09.g1 PHD_FILE: MSMg01no437_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:02:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTCCTCTATAATTTGCGGCGCTAAACGACTCACATTTTCAGAAAAGCGC
GGAANNCTTTTTGGTAGCACCACGAAGCACACTGAAAGAGTTTCCCTGAT
TCTAAATACCATTACATTGTACAATCAAAATTATCCATCACATGTCCAAC
CCTTGTAAACTTAGCTGCTAAAGGCATCACTTAGAAATTGTAACATTCTA
CCCCTTAATCCTAAAGTCTTATTTTTATCTCATATTCCAAAATACTTTTG
TTTAATCCAACTCTAAAAGTCCCCACAGTGTTTAACCGTCCTAGAATTAT
TCAAAAGTCCAAAATCCAAAGTCTTTTCTGAGATTTGAGGCAATCTTTTA
ACTGTGACCACCTTAAAAAAACAAACAAGTTACATGGCTCAAGTATATAA
TGACACAGAATAATATCCCCCAAAAGGATGGGATCAGACCAAAGCAAGCC
CAAAGGCAACAGACAAACAGTAAATAGCAAGTCCTGAAGCTCCTTATCCC
GCATCTGTAGCCTGTGACATAATCTCTTGGGCTCCATTTTCATCTCCAGT
AGCACCCAAGCACATTATAGTTTTTTGCACACACTCCACTCTGCATTTGT
TTTTTCTTAGCCGATATCCTGCGTCCTTTTATACCTCCCATCCCCCCATT
ATCTTCACTTTTAACCTTACTCTTTTATCCTCCCCCGTTTTCTGTCACGG
TGTTCTCTTTTCTGAAAACCCCGGTGATTATACTTTCCTCCCCTCCCCTT
AATGN
NCACGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGTCATCTTGGCCACTAGTGTATT
TACCCACTGAACCATTTCACTAGCCTCCTGACTTATTTTTAACTGCAATA
TCCATTTTGGGGTGGGACGGAGAAGGAGTCTCATGTAGCCAGGAATGAGC
CCAAACTCATACTTATGTGATGATGACCTTGAACTTCAGACCCCTGACTC
ACACCCAGTTACCAAGGAGTCTCTCCTAATAGCATTATCACATAGCTGCT
CCTTAGCTCAGTAAGAGACCCATTTTATGTCCATGCATGTATCGTGTGAG
GCCCTGGAAATTCATAGTTTCTTCTTCTAGTAGTGATATCGAATTATGTC
TTTATTAACTGTGTATGCGAGCATTCTGTGTTTCTAAGTGTGGGAACCAA
AGCAAAACATAATAGAAACAGAACTAAATGAAATAGAACATTCTCAAAAA
ATATTCTATTAGAGTTGGTTGGTAGATAGAGGTAGGAAGATCAAGGGTCC
TAGATCTTTCTCTGTGACCTAATGAGTCTGTGGCCAGCCTGGCCTCCTTG
ACATTCGACTCATAACTTAACAAAAATACAGCCTAACATATCCCTATAAA
CAAAAATAACACTCATTTCACACCAACTTGCTGTGCGTGTATTCTGCCAG
TAAATTGACTTGCCTGGCATATAGAATTTAAGCCTTATCACAAAGGCCTT
TAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no437_a09.g1 MSMg01no437_a09.g1 CHROMAT_FILE:
MSMg01no437_a09.g1 PHD_FILE: MSMg01no437_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:15 2005
         (492 letters)



>mm_chr6_87810692_87811583
          Length = 892

 Score =  897 bits (464), Expect = 0.0
 Identities = 485/492 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagtcatcttggccactagtgtatttacccactgaaccatttcactagcctcctgactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 aagtcatcttggccactagtgtatttacccactgaaccatttcactagcctcctgactta 813

                                                                       
Query: 61  tttttaactgcaatatccattttggggtgggacggagaaggagtctcatgtagccaggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tttttaactgcaatatccattttggggtgggacggagaaggagtctcatgtagccaggaa 753

                                                                       
Query: 121 tgagcccaaactcatacttatgtgatgatgaccttgaacttcagacccctgactcacacc 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 752 tgagcccaaactcatacttatctgatgatgaccttgaacttcagacccctgactcacacc 693

                                                                       
Query: 181 cagttaccaaggagtctctcctaatagcattatcacatagctgctccttagctcagtaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cagttaccaaggagtctctcctaatagcattatcacatagctgctccttagctcagtaag 633

                                                                       
Query: 241 agacccattttatgtccatgcatgtatcgtgtgaggccctggaaattcatagtttcttct 300
           |||||||   ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 632 agacccagcatatgtccatgcatgtatcgggtgaggccctggaaattcatagtttcttct 573

                                                                       
Query: 301 tctagtagtgatatcgaattatgtctttattaactgtgtatgcgagcattctgtgtttct 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 572 tctagtagtgatatcgaattatgtctttattaactgtgtatgtgagcattctgtgtttct 513

                                                                       
Query: 361 aagtgtgggaaccaaagcaaaacataatagaaacagaactaaatgaaatagaacattctc 420
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 512 aagtgtgggaaccaaagcaaaacaaaatagaaacagaactaaatgaaatagaacattctc 453

                                                                       
Query: 421 aaaaaatattctattagagttggttggtagatagaggtaggaagatcaagggtcctagat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaaaaatattctattagagttggttggtagatagaggtaggaagatcaagggtcctagat 393

                       
Query: 481 ctttctctgtga 492
           ||||||||||||
Sbjct: 392 ctttctctgtga 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)