BAC Information

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BAC

Clone NameMSMg01-438A17
Chromosome6 (Build37)
Map Location 87,949,269 - 87,949,793
singlet/doubletsinglet
Overlap geneRab7
Upstream geneAak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131
Downstream geneRpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438A17.T7 (MSMg01no438_a17.b1)MSMg01-438A17.TJ (MSMg01no438_a17.g1)
ACCAG528731AG528732
length766773
length of high quality
(start - end)
524 (69 - 592)525 (67 - 591)
definitionCHROMAT_FILE: MSMg01no438_a17.b1 PHD_FILE: MSMg01no438_a17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:39 2005CHROMAT_FILE: MSMg01no438_a17.g1 PHD_FILE: MSMg01no438_a17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:39 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGGAATTC
AAATCCCATCCCCACATGGTAGCTCACAACCATCCATAATGAAATCTGAT
GCCCTCTTCTGGGGTGTCTGAAGACAGCTACAGTGTACTTACATATAATA
AATGAATAAGTCTTAAAAAAAACAAAAAGGAGAGAGAGAGAAACGTAAAC
ACTAACCCAGCTACAAACTCTTTACTACAATGGTGTTCTGCCTGCAGGAT
ATGCTAGGGCAATTGGTGGCTCAAAGCTGTGGGAGTAACCAACAATAATT
AGCTTGACCTAAGGCCCGTTTTCAAGATACAACCCATACCTAACACTGCT
TGGCTGGGTGATCAGCCCAGGGACCAAGGGCAAACACTAAATAATCCTAA
TCTAAAAAAGGGGGGGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCGC
CCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGT
GGCTCACAACCATCCGTAATGAGATCTGGCGCCCTCTTCTGGAGTGTCTG
AAGACAGCTACAGTATACTTACATATAATAAATAAATAAATCTTTTAAAA
AAAATAATAAATAATATAAAAATACATAAGGGGGGTAAAAAAAACGTGAA
AAATTCATTCCCTACTGACACTCCTGCTTACCTTCAGAGAATCAGTGTCC
TTGTTTCAGCCCATCACCCAGAGAAACTTTCCTCTCTGCCCCAGTATGTG
GCACACAATTCCTAAA
TGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTGGATTGTGTGTTTAAGTCCTCTAACACAGGCG
TGCAAGGTGGAGGGTTGAACCCTGTCTGGATTACAGAGTGTTAGAGACTC
AAGTTTGGAAGTCCAGCTAGCGGCAGTATTCTGTACAGTAGACACAAGAA
TTATGTACGCCTTTTATCACAGACTTAAGAGCCAAAAAGCTTTTCATCTC
TCTGAAGGGAAAACTGAACTAGACAGTTCCCTTCTGTGTCTAAATTTTCC
AAAAGGTTGATTTGCATAATATAGTAGTGTATACAATGGATAAATTGCTG
TTACTTCAAGAATTAAAATTCTCATTTTCTCCCTTTCTGTTTTTTTTCCT
TATATTCAACACTTTATGATGCCCTTTTGTCACTATCCTACTCAAAGAGG
AAAGGAGAACCCACCAGACCTGTCCCAGTGACTCTACCTTTGTTCTAGAA
GGCGCTCCTTTCAGGGTTGTGGTACCTGTAGGTTAGCAGACCCTCCTCCT
TTCCCACCCACCCAAGTGTGGCCCAGCACTAACCCACCGTCTCTTGGGTT
GAGCCCTGTCAGTTCTGTCCCTTCCCAAGGTCCTGCCCTGCATCATGGTT
TGCTTCCCGGAGAACTTTCCCCTTCAGAGGTCTACATTCTAGGGTTGTAG
GCTGTAGTTTTTTTGTTAAAAGAACAACTGGGTTGTCCCTTTAATTTTTC
TTAGCACTATCGAACAGTTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_a17.g1 MSMg01no438_a17.g1 CHROMAT_FILE:
MSMg01no438_a17.g1 PHD_FILE: MSMg01no438_a17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:39 2005
         (525 letters)



>mm_chr6_87949069_87949993
          Length = 925

 Score = 1000 bits (517), Expect = 0.0
 Identities = 523/525 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctggattgtgtgtttaagtcctctaacacaggcgtgcaaggtggagggttgaaccctgtc 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 725 ctggattgtgtgtttaagtcctctaacgcaggcgtgcaaggtggagggttgaaccctgtc 666

                                                                       
Query: 61  tggattacagagtgttagagactcaagtttggaagtccagctagcggcagtattctgtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tggattacagagtgttagagactcaagtttggaagtccagctagcggcagtattctgtac 606

                                                                       
Query: 121 agtagacacaagaattatgtacgccttttatcacagacttaagagccaaaaagcttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agtagacacaagaattatgtacgccttttatcacagacttaagagccaaaaagcttttca 546

                                                                       
Query: 181 tctctctgaagggaaaactgaactagacagttcccttctgtgtctaaattttccaaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tctctctgaagggaaaactgaactagacagttcccttctgtgtctaaattttccaaaagg 486

                                                                       
Query: 241 ttgatttgcataatatagtagtgtatacaatggataaattgctgttacttcaagaattaa 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttgatttgcttaatatagtagtgtatacaatggataaattgctgttacttcaagaattaa 426

                                                                       
Query: 301 aattctcattttctccctttctgttttttttccttatattcaacactttatgatgccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aattctcattttctccctttctgttttttttccttatattcaacactttatgatgccctt 366

                                                                       
Query: 361 ttgtcactatcctactcaaagaggaaaggagaacccaccagacctgtcccagtgactcta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ttgtcactatcctactcaaagaggaaaggagaacccaccagacctgtcccagtgactcta 306

                                                                       
Query: 421 cctttgttctagaaggcgctcctttcagggttgtggtacctgtaggttagcagaccctcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 cctttgttctagaaggcgctcctttcagggttgtggtacctgtaggttagcagaccctcc 246

                                                        
Query: 481 tcctttcccacccacccaagtgtggcccagcactaacccaccgtc 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tcctttcccacccacccaagtgtggcccagcactaacccaccgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)