BAC Information

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BAC

Clone NameMSMg01-438B14
Chromosome6 (Build37)
Map Location 45,131,682 - 45,132,199
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438B14.T7 (MSMg01no438_b14.b1)MSMg01-438B14.TJ (MSMg01no438_b14.g1)
ACCAG528773AG528774
length667778
length of high quality
(start - end)		243 (49 - 291)519 (70 - 588)
definitionCHROMAT_FILE: MSMg01no438_b14.b1 PHD_FILE: MSMg01no438_b14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:44 2005CHROMAT_FILE: MSMg01no438_b14.g1 PHD_FILE: MSMg01no438_b14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATC
CGCGGAATTCAAGATGTTTTTCTTTTTAATAGCTGAATAGTATTCTATTG
TGTAAATGAACCACATTTTTCTGTATCTATTCTTGAGTTGAGGGACATCT
TGGTTGTTTCCAGCTTCTGACTATTACAAATTAGACGGCTATGAACATAG
TGGACCATGTGTCCTTACTACATGTTGGAACATCTTCTGGCTATATGCTC
AGGAGTATTATAGCTGGATCTTCAGGTAGAACTTTTTCCCATTTTTCTGA
GAACCGNCAGAATGGTTTCCAGAGTAGTGGTTCCATTTCNATCTCATCAG
CATGGAGGAGTGTTCTCTTTCTCACATCTTGACAGNATCTGCTGCCATTT
GAGTTTTTGAACTTAGCAATCCTAATGGGGGGAAGGGGAAATCCCCGGGC
TGGTTTAATTTGGCTTTTCCCGAAACCTGGGGAAAAAGGGCCCTTTTTTC
TTAAAAAAATTATTCCGGAATTTTTTGGGGCCCCCCCCGGAAAATTTTCC
ACAATTTTTTTTTTGAGAGGGGGGTTTTTTAAAACACAATATTGGGGGAC
CCCGTGGGGTTTTCCCCCCGGAGGGGGGCTCTCCCCCCCCCCCCGCGGGG
AAAATTTTTTCTTTCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGTCTTTATCATTTAGTTTGTTTTCTCATT
TTCGGATGCATTTATTTACTAAAGCTTAGGAAACTTTAAATGTGGAAGTC
TTGGTTCTATAAAATCATGATTCTAGTGAGAGAGAGGAGACATTTTTTCC
TACAAATTTAAAGCAATTACATTCAACAAACAGCAATAACATTTTTACTT
TGAACCAAAAGAAGTCAATTTTCCAAGTATATTACATCTAATTTAGTGTT
AATAGTATTTTAAAATTTTCTTTTTACATTTTATTGTGTTTTGTAATGTG
AAATTAACCCTTTTAAACAAATTTAGAATATCTTCCTTATTTATATTATT
TCTACGGTGTTTCAATATTGTGTATATTGTAATTTTCATATTTACATATT
CTTTTATAGGCAAATGTTTAAAATAAAAAAAACAGCCCATGGTCATTATA
AGAAAATGAAAACATCAATCTCAGTGTCTTAGAGTGCCTGATTTTTTTGA
TGACCTGAACTTTTCAATAGCAAAGTTGTATGGGTAGGGAATAGGATGGA
GGCATGATGAGAGGANATTNANNNNNTNTTGATTAATTNNANTGTNTTGA
NTTTTTTTAACTTATTAAATTTTNTAGATTAAATATGGGATTTTGTAATA
AATTATTATTAGGGTGTTTATTTTTTTTTTTTAATTTAAGTTGTTATAAA
AATAAAATATTGTTTTTTATTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_b14.g1 MSMg01no438_b14.g1 CHROMAT_FILE:
MSMg01no438_b14.g1 PHD_FILE: MSMg01no438_b14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:44 2005
         (519 letters)



>mm_chr6_45131482_45132399
          Length = 918

 Score =  942 bits (487), Expect = 0.0
 Identities = 511/519 (98%), Gaps = 1/519 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtctttatcatttagtttgttttctcattttcggatgcatttatttactaaagcttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 atgtctttatcatttagtttgttttctcattttcggatgcatttatttactaaagcttag 659

                                                                       
Query: 61  gaaactttaaatgtggaagtcttggttctataaaatcatgattctagtgagagagaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaaactttaaatgtggaagtcttggttctataaaatcatgattctagtgagagagaggag 599

                                                                       
Query: 121 acattttttcctacaaatttaaagcaattacattcaacaaacagcaataacatttttact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 acattttttcctacaaatttaaagcaattacattcaacaaacagcaataacatttttact 539

                                                                       
Query: 181 ttgaaccaaaagaagtcaattttccaagtatattacatctaatttagtgttaatagtatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttgaaccaaaagaagtcaattttccaagtatattacatctaatttagtgttaatagtatt 479

                                                                       
Query: 241 ttaaaattttctttttacattttattgtgttttgtaatgtgaaattaacccttttaaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ttaaaattttctttttacattttattgtgttttgtaatgtgaaattaacccttttaaaca 419

                                                                       
Query: 301 aatttagaatatcttccttatttatattatttctacggtgtttcaatattgtgtatattg 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 418 aatttagaatatcttccttatttatattatttctatggtgtttcaatattgtgtatattg 359

                                                                       
Query: 361 taattttcatatttacatattcttttataggcaaatgtttaaaataaaaaaaacagccca 420
           ||||||||| |||||| |||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 358 taattttcacatttacttattctgttataggcaaatgtttaaaat-aaaaaaacagccca 300

                                                                       
Query: 421 tggtcattataagaaaatgaaaacatcaatctcagtgtcttagagtgcctgatttttttg 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 299 tggtcattataagaaaatgaaaacatcaatctcagtgtcttagagtgcctgatcgttttg 240

                                                  
Query: 481 atgacctgaacttttcaatagcaaagttgtatgggtagg 519
           ||||||||||||||||||||||||||||| |||||||||
Sbjct: 239 atgacctgaacttttcaatagcaaagttggatgggtagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 918
Length adjustment: 10
Effective length of query: 509
Effective length of database: 908
Effective search space:   462172
Effective search space used:   462172
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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