BAC Information

Click to search

BAC

Clone NameMSMg01-438D02
Chromosome6 (Build37)
Map Location 66,150,818 - 66,322,565
singlet/doubletdoublet
Overlap geneLOC100041916
Upstream geneLOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438D02.T7 (MSMg01no438_d02.b1)MSMg01-438D02.TJ (MSMg01no438_d02.g1)
ACCAG528845AG528846
length761751
length of high quality
(start - end)		571 (39 - 609)512 (74 - 585)
definitionCHROMAT_FILE: MSMg01no438_d02.b1 PHD_FILE: MSMg01no438_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:52 2005CHROMAT_FILE: MSMg01no438_d02.g1 PHD_FILE: MSMg01no438_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,150,818 - 66,151,384)(66,322,054 - 66,322,565)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
CACATAGTTTAGCTGAGTCCTAAGAGATATTATTCAATTTGCCCAGCATG
TGAAAATATCAAGCTAGAATTCAAATTCTCACCCTTGCTTACATTCCCCA
AACAAAAGACTTTCTAGTAGTAGTGTCATCTAATCTTACTAGTAGGAAAT
GATGGTACATATCCAAGTCGAAGACATTTAAATTTCATCAGCTCCCACTA
AAATTCATCTTCATCCTTTTGGTTCAGGAGCTGCAAGGACAAAATGACTC
CATTCAGTTGCCCATTGTGCCAGAGTCTCTGAATCTAGATGAGATCCTGC
CCTCAGAACCCAAAGTGACTTCACCCCGTTTGCCAGAACATCCTGGGATT
GGGTCATTCCACAGCACAATACTGTGTTCTGGTTGCATCCTGTCAAGAAG
CACAAGTAGCAATATCTTCCCCTTCAGTGACTTTGTTCCTATTTGGTTAA
GTTTGCATACATGGGATGGCGCCGCTCTAAGCCACTATCTCCCCCTCGAT
TGGCAAAGCAAATGTCTCACTGTACTAGTTCTGGTCTCTTGTCAATCAAA
ATCAATTCTTCAGCCCGCTAACCAGAAGCACAGATTCTTACTATAAAATA
TCACTCACAGGTACCATAAGAGTCTTTACTTCTCTGTGAATCTTTCAAGG
CCAGGACTACTGCCCTGATTTCTCTCTGCATTATCTTCTTAGGACCCATT
AGAAACCAAAG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTACAAATGACTTTAAGTGATAAGTT
TAAAATGATTCTTATTTCTACTTTTTCGATATATGAGCCATTAGATTTAA
GAACTAGGGAAGTTTCTCTCCCCCCCTCCCCTTCTGTCTTCCTCCCCCCT
CCTTAAGTCATGAGTCTTTCCAGGAATGAGAGAAGCTATATGGCCTTGTT
TTCTGCTTGGGTTTCATGGGAAAACCAGCTTCTCTAGCAAATTTATCTAC
CAGAGAGTCTAGGACAATTCATTCTGGAACACTCTTTCAGGGTGTTTATG
AATATGGACATCTAGACCCTCTTTGAAACTTTATGATTCTGTAGATTATG
TCCCTTTGAACATCAGCAATTTTCATTGACTTAATATTAACAAAAGTAAT
GCTTTATTATAAGTAAATTTAAATGTTATAAATATTATTTTATTCTAGTC
CTGGTCTACCATTTACAGTTTTAAAATTCTTTCTTCTTCTGTAATTGTAA
ATAACATAGAGCCACCTGGTATAGCCATATGAGCCATCTCCACCAGTGGG
TTCAACCATCTACAGATATAATTATTAGGAAAATCATTTTCCTCTAACTA
GTCCCTCTGACAAAACTCTTGGGTTCACTTCTCCCTTCCATGGGATCTAT
CTGCCTGGAGCCCCGAATTTATACTCTGCGGAGCTTGTATCCCTATTATG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_d02.b1 MSMg01no438_d02.b1 CHROMAT_FILE:
MSMg01no438_d02.b1 PHD_FILE: MSMg01no438_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:52 2005
         (571 letters)



>mm_chr6_66150614_66151584
          Length = 971

 Score = 1035 bits (535), Expect = 0.0
 Identities = 559/567 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcacatagtttagctgagtcctaagagatattattcaatttgcccagcatgtg 64
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcacatagggaagctgagtcctaagagatattattcaatttgcccagcatgtg 264

                                                                       
Query: 65  aaaatatcaagctagaattcaaattctcacccttgcttacattccccaaacaaaagactt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaatatcaagctagaattcaaattctcacccttgcttacattccccaaacaaaagactt 324

                                                                       
Query: 125 tctagtagtagtgtcatctaatcttactagtaggaaatgatggtacatatccaagtcgaa 184
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 tctagtagtagtgtcatctaatcttagtagtaggaaatgatggtacatatccaagtcgaa 384

                                                                       
Query: 185 gacatttaaatttcatcagctcccactaaaattcatcttcatccttttggttcaggagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gacatttaaatttcatcagctcccactaaaattcatcttcatccttttggttcaggagct 444

                                                                       
Query: 245 gcaaggacaaaatgactccattcagttgcccattgtgccagagtctctgaatctagatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaaggacaaaatgactccattcagttgcccattgtgccagagtctctgaatctagatga 504

                                                                       
Query: 305 gatcctgccctcagaacccaaagtgacttcaccccgtttgccagaacatcctgggattgg 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 505 gatcctgccctcagaacccaaagtgacttcaccctgtttgccagaacatcctgggattgg 564

                                                                       
Query: 365 gtcattccacagcacaatactgtgttctggttgcatcctgtcaagaagcacaagtagcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gtcattccacagcacaatactgtgttctggttgcatcctgtcaagaagcacaagtagcaa 624

                                                                       
Query: 425 tatcttccccttcagtgactttgttcctatttggttaagtttgcatacatgggatggcgc 484
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 625 tatcttccccttcagtgactttgttcctatttggttaagtttgcatacatgggatggttc 684

                                                                       
Query: 485 cgctctaagccactatctccccctcgattggcaaagcaaatgtctcactgtactagttct 544
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cactctaagccactatctccccctcgattggcaaagcaaatgtctcactgtactagttct 744

                                      
Query: 545 ggtctcttgtcaatcaaaatcaattct 571
           |||||||||||||||||||||||||||
Sbjct: 745 ggtctcttgtcaatcaaaatcaattct 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no438_d02.g1 MSMg01no438_d02.g1 CHROMAT_FILE:
MSMg01no438_d02.g1 PHD_FILE: MSMg01no438_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:52 2005
         (512 letters)



>mm_chr6_66321987_66322898
          Length = 912

 Score =  928 bits (480), Expect = 0.0
 Identities = 504/512 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attacaaatgactttaagtgataagtttaaaatgattcttatttctactttttcgatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 attacaaatgactttaagtgataagtttaaaatgattcttatttctactttttcgatata 520

                                                                       
Query: 61  tgagccattagatttaagaactagggaagtttctctccccccctccccttctgtcttcct 120
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 519 tgagccattagatttaagaactagggaagtttctctctccccctccccttctgttttcct 460

                                                                       
Query: 121 cccccctccttaagtcatgagtctttccaggaatgagagaagctatatggccttgttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 459 cccccctccttaagtcatgagtctttccaggaatgagagaagctatatgaccttgttttc 400

                                                                       
Query: 181 tgcttgggtttcatgggaaaaccagcttctctagcaaatttatctaccagagagtctagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgcttgggtttcatgggaaaaccagcttctctagcaaatttatctaccagagagtctagg 340

                                                                       
Query: 241 acaattcattctggaacactctttcagggtgtttatgaatatggacatctagaccctctt 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 acaattcattctggaatactctttcagggtgtttatgaatatggacatctagaccctctt 280

                                                                       
Query: 301 tgaaactttatgattctgtagattatgtccctttgaacatcagcaattttcattgactta 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 279 tgaaactttatgattctgtagattatgtccctttgaacatcaacaattttcattgactta 220

                                                                       
Query: 361 atattaacaaaagtaatgctttattataagtaaatttaaatgttataaatattattttat 420
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 219 atattaacaaaagtaatgctttattataaataaatttaaatgttataaatattattttac 160

                                                                       
Query: 421 tctagtcctggtctaccatttacagttttaaaattctttcttcttctgtaattgtaaata 480
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tctagtcctggtctagcatttacagttttaaaattctttcttcttctgtaattgtaaata 100

                                           
Query: 481 acatagagccacctggtatagccatatgagcc 512
           ||||||||||||||||||||||||||||||||
Sbjct: 99  acatagagccacctggtatagccatatgagcc 68


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |