Query= MSMg01no438_d20.b1 MSMg01no438_d20.b1 CHROMAT_FILE:
MSMg01no438_d20.b1 PHD_FILE: MSMg01no438_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:57 2005
(565 letters)
>mm_chr6_16783589_16784552
Length = 964
Score = 1031 bits (533), Expect = 0.0
Identities = 554/561 (98%), Gaps = 1/561 (0%)
Strand = Plus / Plus
Query: 5 gaattcttccagcacttctaaacacacgcccccccctccccctcggcaaatataattcct 64
|||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||
Sbjct: 205 gaattcttccagcacttctaaacacacg-ccacccctccccctcggccaatataattcct 263
Query: 65 ttcagagagttaagtgaaagcaaggtatgaaaggtagatcacaattgagtagcaccagca 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 264 ttcagagagttaagtgaaagcaaggtatgaaaggcagatcacaattgagtagcaccagca 323
Query: 125 gagagctgcttcctggttgatgtcttgagcctgtttgcggcttacaactcatcgccatcc 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 gagagttgcttcctggttgatgtcttgagcctgtttgcggcttacaactcatcaccatcc 383
Query: 185 tctgagctaaggctgctttggctgctagctttggaaactgcaggggaaatggcagagagt 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tctgagctaaggctgcttcggctgctagctttggaaactgcaggggaaatggcagagagt 443
Query: 245 agtgggtccgtcccaaaggggcatattgtatcacttagtagcatgccatccaatctttgt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgggtccgtcccaaaggggcatattgtatcacttagtagcatgccatccaatctttgt 503
Query: 305 tcctctttcaaagcggcactaaaggataaatctgtgaagtgagacaatggatcagagaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcctctttcaaagcggcactaaaggataaatctgtgaagtgagacaatggatcagagaaa 563
Query: 365 gccacagcttgctcatagaactccgggcttgtcccctgagttggagtcagttgtaagcaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gccacagcttgctcatagaactccgggcttgtcccctgagttggagtcagttgtaagcaa 623
Query: 425 cagcctcctaagttcctctcaggatgggtctgctgcttggtgatgtgggtaccaacatca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagcctcctaagttcctctcaggatgggtctgctgcttggtgatgtgggtaccaacatca 683
Query: 485 gctgtgccgagtgaagccaggattggtagaccatgagcacgtgcttgtatttctagttcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctgtgccgagtgaagccaggattggtagaccatgagcacgtgcttgtatttctagttcc 743
Query: 545 tgcaaatgcccaaataagaat 565
|||||||||||||||||||||
Sbjct: 744 tgcaaatgcccaaataagaat 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 964
Length adjustment: 10
Effective length of query: 555
Effective length of database: 954
Effective search space: 529470
Effective search space used: 529470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no438_d20.g1 MSMg01no438_d20.g1 CHROMAT_FILE:
MSMg01no438_d20.g1 PHD_FILE: MSMg01no438_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:57 2005
(509 letters)
>mm_chr6_16945077_16945986
Length = 910
Score = 978 bits (506), Expect = 0.0
Identities = 509/510 (99%), Gaps = 1/510 (0%)
Strand = Plus / Minus
Query: 1 atcagaaggctcttgtattttatttcctctcttgctctggggcagagactgctctacttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 atcagaaggctcttgtattttatttcctctcttgctctggggcagagactgctctacttc 651
Query: 61 acagggtgaacttgttacctcttgccctgagaggcagagacgcactgcctgaacgcttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 acagggtgaacttgttacctcttgccctgagaggcagagacgcactgcctgaacgcttcc 591
Query: 121 attttgagacaccttgtaggaatccttccaatttctttagaggaggaagctctcagcagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 attttgagacaccttgtaggaatccttccaatttctttagaggaggaagctctcagcagt 531
Query: 181 cagtctggtacactgctgccacagaagcccgaggatgctgttttccaggcagaggtggca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cagtctggtacactgctgccacagaagcccgaggatgctgttttccaggcagaggtggca 471
Query: 241 gtctcccatagtatagacccaatagggttttggggcggagggaaaaagacagcactttgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gtctcccatagtatagacccaatagggttttggggcggagggaaaaagacagcactttgc 411
Query: 301 aatagctctatagctcttattgaatatcccgtgtagcaattattattgtatttcagtctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aatagctctatagctcttattgaatatcccgtgtagcaattattattgtatttcagtctc 351
Query: 361 gtagccttcgctttttgtgtgaattaggaaagggaaacattaggtgacagtttaagcctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtagccttcgctttttgtgtgaattaggaaagggaaacattaggtgacagtttaagcctt 291
Query: 421 tgcttaagggag-aaaaaaaaagcctttaatttattaaaattcaaattaaacaaatctcc 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tgcttaagggagaaaaaaaaaagcctttaatttattaaaattcaaattaaacaaatctcc 231
Query: 480 tgctgttactaaagttttctgaactatttt 509
||||||||||||||||||||||||||||||
Sbjct: 230 tgctgttactaaagttttctgaactatttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space: 449100
Effective search space used: 449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
