BAC Information

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BAC

Clone NameMSMg01-438G13
Chromosome6 (Build37)
Map Location 24,611,172 - 24,611,604
singlet/doubletsinglet
Overlap geneWasl
Upstream geneCadps2, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2
Downstream gene4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438G13.T7 (MSMg01no438_g13.b1)MSMg01-438G13.TJ (MSMg01no438_g13.g1)
ACCAG529010AG529011
length759750
length of high quality
(start - end)
436 (66 - 501)607 (70 - 676)
definitionCHROMAT_FILE: MSMg01no438_g13.b1 PHD_FILE: MSMg01no438_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:11 2005CHROMAT_FILE: MSMg01no438_g13.g1 PHD_FILE: MSMg01no438_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGAATACTATTTCAATACATCCGCGGAATTCTCT
ACCTTTACCTGCTTTAGTTCAGGCTCATTATTATTTTACAGGGGCATCTA
CAAACACCTTCGCGATGTCCTGTGTCATCCCTCTCACAATCCATAGTTCA
TTTCTACACTGCCTTCACCTTACCCAAGTACCCTGTCAAAGTGAGCCCTG
ACCTGTGTGTGGCTCCCCACTAACAATGCTTCCTCAACTGTACCTGTCTC
TTAGTTATGGAATGTGCCTTGACATCTTAAGACAAAGAACTGCTGCAGTC
AAAGAACTTGTTTTTTCTTTAACTCACAAAACTCAAACTCCAGCAAAAGA
AAGCCTATGATTGTCAATGTGGCATCCAATGTTTCCAATGGGACAATTCT
AGAATTACCCACAGAAATAAACTTCTACTCTCAAATTGTAGTATACATTC
AAATCTTCCCACTAACCTGGATTTAAAAAAAAAAAAATCAAGCTCTAACT
CATACCTAGGAAACCTAATTATCAAGAAATTGAATCTACCCACACATGTC
TAATATTTCTACAGTGATTCCCATATATACATGAATGTGTAAATACAGGC
AGAATCCCTGTTTCCTAGCAAACTCTTATTTTCCAAGTCCTTTTCTTGTC
TTTTATCAACCCTGTTTAGCACCCTGTTAAACCTTGCCTCAAATGTTTGT
CCCACTCTATCAATATTTTTCCCCTTTACTCTTCCAATTAAACCCAATAA
TATCTTCCG
CAGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGCGGTAGAGAGTATGAAGTCTGAAGTGG
CCATCTTTTGTAGTCAGGCAAGGCTTCCAGTGGTGGGACTGGGTTAGATT
TGGTTGTGTTCTTGCATAAGGAGGTCCCATGGAGATCTAAGCCATCTTAA
GCATCTAAGCATATGCCAGGTTGGTAGGTTGCTCCCTGGAAACTGTCATT
GGGGCCAAAGGCAACTTCTACTCAGCTCACTGAATGTAGAGGGGTCCAGC
GGATGAATGTATGGATTCTTCATTCTAGTCTCTTTGGTGTGAGATAGTAC
TCTGAAGGCTATGGAAAGAAAACTGGAAACAAACACAGCCACAAAACCCT
CCGTCTACAGCCTTTCCTGCCTGTAAGATATGCTGGGGCATTAGTGGCAC
AAAACTTGTAGGAGTGCCCAACCAATATTTAATTTAACTTGAGGCCTACA
CTATGCGAATGAGGCCACACTCCTATACTGGCTTTCCAGGAACTTACAGC
TGGATACCCTGGAGAAAAGTGGTAGAATCAAACACAAGTGGCAAAAAAAT
ATTAATGAACAGATTCCTAATGATATTCTGCTATACTCATAGATCAGTTG
CTTTTCCAACCAGAGTGGCTTCCTCAGGCAACAGATGGAATCAAGTGCAG
AGCCCCACAACCAGATATTATGTGAAGGGAAAGTCTAAACTGGAAGTCTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_g13.b1 MSMg01no438_g13.b1 CHROMAT_FILE:
MSMg01no438_g13.b1 PHD_FILE: MSMg01no438_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:11 2005
         (436 letters)



>mm_chr6_24610972_24611808
          Length = 837

 Score =  775 bits (401), Expect = 0.0
 Identities = 425/433 (98%), Gaps = 1/433 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttcaggctcattattattttacaggggcatctacaaacaccttcgcgatgtcctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 201 agttcaggctcattattattttacaggggcatctacaaacaccttcgggatgtcctatgt 260

                                                                       
Query: 61  catccctctcacaatccatagttcatttctacactgccttcaccttacccaagtaccctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 catccctctcacaatccatagttcatttctacactgccttcaccttacccaagtatcctg 320

                                                                       
Query: 121 tcaaagtgagccctgacctgtgtgtggctccccactaacaatgcttcctcaactgtacct 180
           ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 321 tcaaagtgagccctgacctgtatgtggctcaccactaacaatgcttcctcaactgtacct 380

                                                                       
Query: 181 gtctcttagttatggaatgtgccttgacatcttaagacaaagaactgctgcagtcaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctcttagttatggaatgtgccttgacatcttaagacaaagaactgctgcagtcaaaga 440

                                                                       
Query: 241 acttgttttttctttaactcacaaaactcaaactccagcaaaagaaagcctatgattgtc 300
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttgttttaactttaactcacaaaactcaaactccagcaaaagaaagcctatgattgtc 500

                                                                       
Query: 301 aatgtggcatccaatgtttccaatgggacaattctagaattacccacagaaataaacttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatgtggcatccaatgtttccaatgggacaattctagaattacccacagaaataaacttc 560

                                                                       
Query: 361 tactctcaaattgtagtatacattcaaatcttcccactaacctggatttaaaaaaaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tactctcaaattgtagtatacattcaaatcttcccactaacctggatttaaaaaaaaaaa 620

                        
Query: 421 aa-tcaagctcta 432
           || ||||||||||
Sbjct: 621 aaatcaagctcta 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space:   353556
Effective search space used:   353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)