BAC Information

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BAC

Clone NameMSMg01-438J10
Chromosome6 (Build37)
Map Location 19,592,478 - 19,593,076
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438J10.T7 (MSMg01no438_j10.b1)MSMg01-438J10.TJ (MSMg01no438_j10.g1)
ACCAG529147AG529148
length764805
length of high quality
(start - end)		603 (38 - 640)492 (70 - 561)
definitionCHROMAT_FILE: MSMg01no438_j10.b1 PHD_FILE: MSMg01no438_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:25 2005CHROMAT_FILE: MSMg01no438_j10.g1 PHD_FILE: MSMg01no438_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGC
AACTTACTTACAATTTGCAGTTAAAGTTCACACTGGAAATGCTTTAATTT
AAATTTTAGGGGGTGATTTGGACATTAAATGGATGTACTTTTTTAAGATC
AACGTACTTTGTCTATCCATTCAGGATTTGTTTTATATCTCTATTCTGAG
TATATCCAGTGTTGCAAGGAAGGTGGTTTTCAAATGCCTTTGTTTCTTTT
TCAGACTGCTGCTGTCTGATTAATGGATTTTATAAATAGTATAAACTTAT
CAAGGGTTTCATCTTACACCTAGATGTTACAAACATATTTGCAGACCACT
AACTCCAAGAGTAACATTCAGATAGGCCACCCTTTCTCAGAAAGCTAATA
GTTGCCAGGAACACTTTTCTACTTTGTTGATGTTGAATCAAAGATATAAG
TAATCTTTATAGCCTAAAGGCTTTATTTAGTTAGTTTATTCACAATTTGA
AACCAGACTTTGTAGATGACTTATATAAGAATCTAAGAAGAGAAGCATCA
CAAACAATTTGCATGCTCTCTCTTCAAGGTTCTTTGATTAATAAGAAACA
TCATAAACTATCATACATACATCTGTACATATGAATCTTTATAGTCTTGG
CTGAGCAAATAATGCTTAAATCTTATATTTATTCTAACTCTGAATTCCTT
TGTTAGACCCAATTCCCTTTTGTTGCCATGCCATGGGCACATTCTTTATC
AAAGTTGTTTCTCG

CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGCACAGCAGAAGGAGAAAGAACTAAGAAAG
TCAGATAGAATATAAGGATTATGCACAACAAGACCAACTGAAAAGCAGTC
ATGCACAAATGAAATCTCTACAGCTGTTGTCCAGGGCTAAGGTTAGGAGA
TATGGAAAACAACTGTTTTTTGTTTGTTTGTTTGTTTGTTTCAAAGAACT
GTCACGGGCTACTGAGATCTCTCCATCTCGGGCAACTGCAGTCAATACCT
TGTTTCAAATGGTGGGTCACCTGTAGGGATGTATCTCTTATTTCTCAGTG
TCCAAGACACCATCCTTTTCTACAAGGAACTGCTGCTTTTGAGATGTCTC
CATCCTGGCCTACTACAGGCAGTCCCTGTCATTATATATTATTTAGCAAA
AAACTAAACCAAAAGTCATGAATCTGAGAAAGGAAATAGTAGCATTGGAG
AATAAAGGTCGCGGCATGGGGGTTATAACAGGTATCAGAAGTATAATAAA
TTTTATATTAAATAATTTTAGAAAATTAAATTTTAGGAAATTTAAACTTG
TTCCCACCAATAATTTAAATGGGATGAAATTTGTTCCCCAATTTATTGGC
CAAAACAAGGCCTATTAAAATTTCCTTTGGTCAAAACCAAATTTTTTCCT
ATAATAATGGGGTCTTCTTATTAGTATCCAATACCCCCTATTCCTAATCC
TCCTAATCTCTTATGTCCACCAAAACAAATTCTCTTTCGTTCTTCACTTA
ATTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_j10.b1 MSMg01no438_j10.b1 CHROMAT_FILE:
MSMg01no438_j10.b1 PHD_FILE: MSMg01no438_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:25 2005
         (603 letters)



>mm_chr6_19592274_19593276
          Length = 1003

 Score = 1081 bits (559), Expect = 0.0
 Identities = 589/599 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcaacttacttacaatttgcagttaaagttcacactggaaatgctttaattta 64
           |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 803 gaattcagcaacttacatataatttgcagttaaagttcacactggaaatgctttaattga 744

                                                                       
Query: 65  aattttagggggtgatttggacattaaatggatgtacttttttaagatcaacgtactttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aattttagggggtgatttggacattaaatggatgtacttttttaagatcaacgtactttg 684

                                                                       
Query: 125 tctatccattcaggatttgttttatatctctattctgagtatatccagtgttgcaaggaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tctatccattcaggatttgttttatatctctattctgagtatatccagtgttgcaaggaa 624

                                                                       
Query: 185 ggtggttttcaaatgcctttgtttctttttcagactgctgctgtctgattaatggatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggtggttttcaaatgcctttgtttctttttcagactgctgctgtctgattaatggatttt 564

                                                                       
Query: 245 ataaatagtataaacttatcaagggtttcatcttacacctagatgttacaaacatatttg 304
           |||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 563 ataaatagtataaacttatcaagggtttcagcttacacctagatgctacaaccatatttg 504

                                                                       
Query: 305 cagaccactaactccaagagtaacattcagataggccaccctttctcagaaagctaatag 364
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cggaccactaactccaagagtaacattcagataggccaccctttctcagaaagctaatag 444

                                                                       
Query: 365 ttgccaggaacacttttctactttgttgatgttgaatcaaagatataagtaatctttata 424
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 443 ttgccaggaacacttttctactttgttgatgttgaatcaaaaatataagtaatctttata 384

                                                                       
Query: 425 gcctaaaggctttatttagttagtttattcacaatttgaaaccagactttgtagatgact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcctaaaggctttatttagttagtttattcacaatttgaaaccagactttgtagatgact 324

                                                                       
Query: 485 tatataagaatctaagaagagaagcatcacaaacaatttgcatgctctctcttcaaggtt 544
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 323 tatataagaatctaagaagagaagcatcacaaacaatttgcaagctctctcttcaaggtt 264

                                                                      
Query: 545 ctttgattaataagaaacatcataaactatcatacatacatctgtacatatgaatcttt 603
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 263 ctttgattaataagaaacatcataaactatcatacataaatctgtacatatgaatcttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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