BAC Information

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BAC

Clone NameMSMg01-438K22
Chromosome6 (Build37)
Map Location 53,657,434 - 53,657,932
singlet/doubletsinglet
Overlap genenone
Upstream geneTax1bp1, Jazf1, LOC666259, LOC666516, D430007I03, Creb5
Downstream geneLOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-438K22.T7 (MSMg01no438_k22.b1)MSMg01-438K22.TJ (MSMg01no438_k22.g1)
ACCAG529219AG529220
length1,511781
length of high quality
(start - end)
---493 (74 - 566)
definitionCHROMAT_FILE: MSMg01no438_k22.b1 PHD_FILE: MSMg01no438_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:33 2005CHROMAT_FILE: MSMg01no438_k22.g1 PHD_FILE: MSMg01no438_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:04:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTGTGGGGGTGGTNTTTGTGTGTGCTCGGTTGGGAGCCTCCCCCCACA
CCCGCCTCTCCCTAGGTCACCCCTCGCGACCNTACACCCGCGCGACGAGG
CGTNACTCCTCCACTCGACTAAGTGCCGCTGTACACCAGACTATCATCTA
CTTGTCTACTTTACTCATATCTAACTCAGAGTCATTGAGATGGTGTGTCT
CATGGCGTAGCCGCAGCGGCCACACGCTGGCGTGTAGTTATATAGTCTAG
ATAGCATACTTACTCTCGACTGTAAGAGCGCGCCGCGCGGTCTCGTAACT
AGGTGGCATTCTCCTGTACCATTCGTACTATTTCGCTAAATCTATTCGGT
TCCTCCTCTTGTCAGTGCTATCCGTCCACGCTACCGGACCGATTCGGTGT
GTGGGCTAGCAAGGCGTGTGAAACGCTAGATCACGCTCTGAGCGCGACAT
AAGGTATATCTGCTGTGACGAGGTCTTGCGGTGGGTAGAACATCTCGATG
GTGTATATGTGCTGACATAGCCGCCGATGCTGTTACACTGCACAGCAGAC
GGTTTGACTACTGATTTATCAACCGNAACACCAAGCGAGAGCATGGCGCA
GCCGAGCGACGCGCAAAGGGCGAACGGCCGCTCTACTCTATGGGCGCCTC
TCTGCTCACATATCTGCGCGTAGATGGCTGCTGTACTGATCTAGTGAATG
ATACCACTCTATCTCATCCTCTTTACCGCACGCCCTACTTCGCCTCACTA
CTGCTATTGACGACTTGCTCCTCATCCTCGCGCTCCTGCCGCGTCGCTCG
TTCGTCATGTCTACCTATGGCGTCGCGTTAGGGAGCAACCGCACGGAGAC
TCGCAGTGTCTGTGAGCGTCTGTGACGTGGCGATGTGTCGGTGCGATGCG
CGCCTGCCGGCCGGTCGCGTCGTGGCGCGCGTGGTCATCGGTGGCTTCGC
TGCACGCCGCTGACTCACACCGCTAACTGCCGCACTGCTGGCACTTAAGG
TTGATCCGTCCGTCCGAGTCTCGTGACGCTCATTATCCTATATACACCTC
CGCGTCGTCACTGGCCNCTCGCGACTGCAACGTCCGCATCTCGCGCAGCA
GTACCNGATACGTGCTACGCTCGCGTCTGCGTCCCTCTAGATAGGCGTTG
CTATGCGTGTCTAGCGCTTGTCACGTATATGCTCGGCGTCTAGGTCTGTG
CAGACCCTGAGATCCACGTCTCACTACCGACATAGGCGACGTACCTGGGG
CGGCGAGTGCCCNGGGTCCACCGCAGACGCGCGGGCGTCGTGCGGGGCGC
GCTAGTGAGTCGAGAGTCTCGCTGCGCCCGTTGCTGCTGCGTCTGAGCAC
ATCGGAGCTCTACGCTACGATTCGCGCTTACACAATGCGTCTTCTGTCTC
AGGCTCGCGTCGCGTGATCGCAGTCTGTACAACTAGTGTATCGACGTATG
TCACGGATGTGTGTGATGTTCGAATGCTGAAACGTGGTGTCAATAGTGCT
GAATGGTAGAG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTATTTAAGGCTGTATTTTTCTGTTG
TTTACTTGATGCAAGGACATCTGTGGATCCTGGGAGATTCTCCTTTCTAG
TAAAGAACAGATAATTTTGTGATTCACAGTAAACTGAAGCAAATTTCATT
TTTCTTTTCTTTTTCTCGTGAAAGAAAGAAAAGCCCCCCCCATGATATTG
ATTGGATTACTTAAAGTGCCTAACTCACCTTAGAAATCACTAAATTCATC
ATGTAGAATGGTCACAGCAGAATGAGTTATAACCAGAGTAAATAATAGGA
AGAAAGAAAGGAAGGAAGGAAGGGAAAGCCAAGCAGAGATAACCCATAAG
AAATGTCAAGTCATTATAGTGCTTATGGAACACTCCACAGCACCCTCACA
CTCATGTGTATTATTAAGCAAAAAAGTGAATGGTCCGGAGAACAACAGGA
AGCAGGAAGCTCATTGGTTCTCTAAGTGTGGTCTGGGTAGCCTCAGCATC
ATCTTGCCTGGGAAGCTGTAGAAATGCAGGCTCATATGCTCCACCTCAAA
CATTCCCCACTAGGAGGGAGAGCCAGTAAACCACTTGAAGCTCACAGGTT
GAACTAGGAACTTGAAATGTCCCACTGCCCTGGTATGGCCCGGGTTGACC
CCCTCTCTAATTGTGTGTTTTCTTCCGGCCGTACCTCTTCTTGTATTGTC
CTATTTCTGCTCTGTCTTTTCAGTACCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no438_k22.g1 MSMg01no438_k22.g1 CHROMAT_FILE:
MSMg01no438_k22.g1 PHD_FILE: MSMg01no438_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:04:33 2005
         (493 letters)



>mm_chr6_53657240_53658132
          Length = 893

 Score =  907 bits (469), Expect = 0.0
 Identities = 489/499 (97%), Gaps = 6/499 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtatttaaggctgtatttttctgttgtttacttgatgcaaggacatctgtggatcctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 agtatttaaggctgtatttttctgttgtttacttgatgcaaggacatctgtggatcctgg 254

                                                                       
Query: 61  gagattctcctttctagtaaagaacagataattttgtgattcacagtaaactgaagcaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gagattctcctttctagtaaagaacagataattttgtgattcacagtaaactgaagcaaa 314

                                                                       
Query: 121 tttcatttttcttttctttttctcgtgaaagaaagaaaag------ccccccccatgata 174
           ||||||||||||||||||||||||||||||||||||||||      |||||||| |||||
Sbjct: 315 tttcatttttcttttctttttctcgtgaaagaaagaaaagccccccccccccccgtgata 374

                                                                       
Query: 175 ttgattggattacttaaagtgcctaactcaccttagaaatcactaaattcatcatgtaga 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttgattggattacttaaagtgcctaactcaccttagaaatcactaaattcatcatgtaga 434

                                                                       
Query: 235 atggtcacagcagaatgagttataaccagagtaaataataggaagaaagaaaggaaggaa 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atggtcacagcagaatgagttataaccagagtaaataataggaagaaagaaaggaaggaa 494

                                                                       
Query: 295 ggaagggaaagccaagcagagataacccataagaaatgtcaagtcattatagtgcttatg 354
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 495 ggaagggaaagccaagcagagataacccataagaaatgtcaagtcattatagtgtttatg 554

                                                                       
Query: 355 gaacactccacagcaccctcacactcatgtgtattattaagcaaaaaagtgaatggtccg 414
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 555 gaacaccccacagcaccctcacactcatctgtattattaagcaaaaaagtgaatggtccg 614

                                                                       
Query: 415 gagaacaacaggaagcaggaagctcattggttctctaagtgtggtctgggtagcctcagc 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gagaacaacaggaagcaggaagctcattggttctctaagtgtggtctgggtagcctcagc 674

                              
Query: 475 atcatcttgcctgggaagc 493
           |||||||||||||||||||
Sbjct: 675 atcatcttgcctgggaagc 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)