BAC Information

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BAC

Clone NameMSMg01-439D03
Chromosome6 (Build37)
Map Location 3,419,000 - 3,419,440
singlet/doubletsinglet
Overlap geneAI987662
Upstream geneLOC100039885, LOC100039896, LOC100040185, EG667335, Samd9l
Downstream geneCcdc132, Calcr, LOC100039942, Tfpi2, Gngt1, Gng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439D03.T7 (MSMg01no439_d03.b1)MSMg01-439D03.TJ (MSMg01no439_d03.g1)
ACCAG529608AG529609
length790727
length of high quality
(start - end)
296 (65 - 360)441 (72 - 512)
definitionCHROMAT_FILE: MSMg01no439_d03.b1 PHD_FILE: MSMg01no439_d03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:14 2005CHROMAT_FILE: MSMg01no439_d03.g1 PHD_FILE: MSMg01no439_d03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAAAGATTACCGGGTTTTCTTTAATTGCTGGCAGGGAGATTTGCATGA
ACATTGGTTTTATTTGTTTGTTTTTTCTGCTATTGCTTTTGTTCTGAGAC
AAGGTTTCATCTATGACTGTAGCCTTGGCCTGCCTGAAACTCAAGTTGCC
CTGAAATTCACAGAGATCTGCCTGTCCCTGCCTCCCAAGTGCTGGAGTTA
AAGGCATGTGCTACTATACCCCGTGTGAAAGCTGTTATAAGACACATTTG
TGTTAAAGGGTGGGAAGGGTGGGGTGGAGAGACAGAGAGAGAGAGAGAGA
GAGAGAGAGAGATATATAGAGATAGAGCGAATAGCGGGTTCGTCCCTTTT
TCTCCCCTCTACGTTCTTCCCCCCCGCCTCTGCTTTTACGCCCCGATCCT
TCCCCCGTCCTTTCAACGCTAACATTCCTATCCGTCCTCACCTTTACCTA
ATTTCCGCTCCTCGTCCACTCATTCACCATACCCCCTCTTTCTTTTTGTC
ATCGTTTCCCCCACCTACTTTTCCCCCATCCCGCCAACCTATCACCTAAA
AACTCCCTTCTCTCCCCCCATTTCCTCGTTCCCCCCCTCAATCACCCCAC
GTTTTACCAATATCTTCCGCTTCTTTTTCCCTCCCAATCATATATATAGC
CCTCACTCCCCCTCCCTTATCTACCATTTACCTATCACCTTCCCCCCTTC
CATATTCCCCCGTCCTTATTCCTATTAAATCTCCTATTCC
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTTATCTGTAGTCAAACTAAGGTGACAT
TCAGCCACAATGTGGCAAAGAAAAAATAGACTTCAAATAAATGTTTGATT
AAGATCCAGTTCAGCAGAGAAATTGATTGCATCACTGGTGAACAATCAGG
TATTTATATGGGCATTAGTGAATAGTTAACAGAATCACAGTGGCCCCAAA
ATGGCACAGATGTTTTTCATAACAAGAAACATCCTTGCTTACAGACCTAA
GAGGATAAGAGAACAACAGTGTATGGTCAAATGAGATGGGATAGCATGGG
TTCCATAACCTGCCTACTACAGTTTGCTATATATCAGCTATGCTACAGCA
GGAAAAGATAAGACATTTGTAAATGATAATATTCTACCGGGGAACACTGC
ATAGCTCTGTATTGAGAAAAGGAGATGGGTAAGGGCTTAAATTTATTTTA
ACTCCTAAGGCAGTAACAGAACCTTTATGGAGGAAGAAGAGGTTGCAGGC
TAGGCATTCCTTCCAGAACCAAGTATGTTACTGACTACACACAGATTCTA
TGTCTGAAGTGCGAGTGCCATGACAGTTGTTGAACTATGATTTCAGAGCA
CATCAGTCTGATTATACAGGCCATTTTCTTGATTTTTTTTCCCCACTGTT
TTTCTACCTTTTTGTTAAATATCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_d03.g1 MSMg01no439_d03.g1 CHROMAT_FILE:
MSMg01no439_d03.g1 PHD_FILE: MSMg01no439_d03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:15 2005
         (441 letters)



>mm_chr6_3418800_3419640
          Length = 841

 Score =  845 bits (437), Expect = 0.0
 Identities = 440/441 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttatctgtagtcaaactaaggtgacattcagccacaatgtggcaaagaaaaaatagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttttatctgtagtcaaactaaggtgacattcagccacaatgtggcaaagaaaaaatagac 582

                                                                       
Query: 61  ttcaaataaatgtttgattaagatccagttcagcagagaaattgattgcatcactggtga 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ttcaaattaatgtttgattaagatccagttcagcagagaaattgattgcatcactggtga 522

                                                                       
Query: 121 acaatcaggtatttatatgggcattagtgaatagttaacagaatcacagtggccccaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 acaatcaggtatttatatgggcattagtgaatagttaacagaatcacagtggccccaaaa 462

                                                                       
Query: 181 tggcacagatgtttttcataacaagaaacatccttgcttacagacctaagaggataagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tggcacagatgtttttcataacaagaaacatccttgcttacagacctaagaggataagag 402

                                                                       
Query: 241 aacaacagtgtatggtcaaatgagatgggatagcatgggttccataacctgcctactaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aacaacagtgtatggtcaaatgagatgggatagcatgggttccataacctgcctactaca 342

                                                                       
Query: 301 gtttgctatatatcagctatgctacagcaggaaaagataagacatttgtaaatgataata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 gtttgctatatatcagctatgctacagcaggaaaagataagacatttgtaaatgataata 282

                                                                       
Query: 361 ttctaccggggaacactgcatagctctgtattgagaaaaggagatgggtaagggcttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ttctaccggggaacactgcatagctctgtattgagaaaaggagatgggtaagggcttaaa 222

                                
Query: 421 tttattttaactcctaaggca 441
           |||||||||||||||||||||
Sbjct: 221 tttattttaactcctaaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)