Query= MSMg01no439_g04.b1 MSMg01no439_g04.b1 CHROMAT_FILE:
MSMg01no439_g04.b1 PHD_FILE: MSMg01no439_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:30 2005
(468 letters)
>mm_chr6_77713386_77714253
Length = 868
Score = 868 bits (449), Expect = 0.0
Identities = 461/465 (99%), Gaps = 2/465 (0%)
Strand = Plus / Minus
Query: 5 gaattccatacgattatattttaaaaggcaaaatagggctgtagagggcttgcagctgga 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 gaattccatacgaagatattttaaaaggcaaaatagggctgtagagggcttgcagctgga 736
Query: 65 gttacaggcagtcatgaagagccatgtgggtctaagaactgaactgtagtcctcagcaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 gttacaggcagtcatgaagagccatgtgggtctaagaactgaactgtagtcctcagcaag 676
Query: 125 accagcagtcattcaaacctactttctggaaattttgt-attgaaatttcttccattgag 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 675 accagcagtcattcaaacctactttctggaaattttgtaattgaaatttcttccattgag 616
Query: 184 taatgagacctttgcctggagaaagcagctctgtggaatgccttcagctttgtgactggt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 taatgagacctttgcctggagaaagcagctctgtggaatgccttcagctttgtgactggt 556
Query: 244 gtctctatgctgtagatgtgaaaatgcattctgctctttgaaacactgcttgatagcaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gtctctatgctgtagatgtgaaaatgcattctgctctttgaaacactgcttgatagcaat 496
Query: 304 caagttatacataggtcattgaaatataataaaaaatgattttgccttactgtatgtgaa 363
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 495 caagttatacataggtcattgaaatataat-aaaaatgattttgccttactgtatgtgaa 437
Query: 364 cagtcttgaccaagtagaataaagaaaatactaccagcaaacctaaagcattagtctacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 cagtcttgaccaagtagaataaagaaaatactaccagcaaacctaaagcattagtctacc 377
Query: 424 caatgttaaaatataaatattgaaatagtaacctaaaagatcaaa 468
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 caatgttaaaatataaatattgaaatagtaacctaaaagatcaaa 332
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_g04.g1 MSMg01no439_g04.g1 CHROMAT_FILE:
MSMg01no439_g04.g1 PHD_FILE: MSMg01no439_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:30 2005
(480 letters)
>mm_chr6_77597032_77597911
Length = 880
Score = 899 bits (465), Expect = 0.0
Identities = 477/481 (99%), Gaps = 2/481 (0%)
Strand = Plus / Plus
Query: 1 catctggtcaataagaaattataaccaccttaagaaactgaacgaacgtttactatttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catctggtcaataagaaattataaccaccttaagaaactgaacgaacgtttactatttta 260
Query: 61 tagtttattactttatgtttgagaaagaa-ttatttgatagctaagagcttaatttttga 119
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tagtttattactttatgtttgagaaagaaattatttgatagctaagagcttaatttttga 320
Query: 120 gacaggaaattgggactagtgacaaagtgtttgttttattggagcccatgggtctcaatg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaggaaattgggactagtgacaaagtgtttgttttattggagcccatgggtctcaatg 380
Query: 180 agttggtatataaggctatcactcatgcaaacaacttcacaatgtaacttgattacatta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttggtatataaggctatcactcatgcaaacaacttcacaatgtaacttgattacatta 440
Query: 240 aatcttagcctcagggaaagcactgcccttcttccccatcactgattaaaatgtgagatt 299
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatcagagcctcagggaaagcactgcccttcttccccatcactgattaaaatgtgagatt 500
Query: 300 tcctttaaaatccctaaatgccacatgtcaacatagcactctgacactgtcaattgactc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctttaaaatccctaaatgccacatgtcaacatagcactctgacactgtcaattgactc 560
Query: 360 catgatgtaccaggtgtttggctaagaaatgagttccccagcaacttcagcaacagaagt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgatgtaccaggtgtttggctaagaaatgagttccccagcaacttcagcaacagaagt 620
Query: 420 gattattattaccaagtattctcaatagtgtctgatgagcaagtgattagccttgccggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 621 gattattattaccaagtattctcaatagtgtctgatgagcaagtgattagc-ttgccggg 679
Query: 480 c 480
|
Sbjct: 680 c 680
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
