BAC Information

Click to search

BAC

Clone NameMSMg01-439J13
Chromosome6 (Build37)
Map Location 91,269,685 - 91,270,026
singlet/doubletsinglet
Overlap genenone
Upstream geneChst13, Uroc1, Zxdc, Ccdc37, Klf15, Aldh1l1, Slc41a3, Iqsec1, LOC100043646, EG665685, Nup210, Hdac11, Fbln2
Downstream geneLOC665716, Wnt7a, LOC100043659, LOC625420, Chchd4, Tmem43, Xpc, Lsm3, Slc6a6, Grip2, C130022K22Rik, 4930590J08Rik, Fgd5, Nr2c2, Mrps25, Zfyve20, Trh, LOC665805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439J13.T7 (MSMg01no439_j13.b1)MSMg01-439J13.TJ (MSMg01no439_j13.g1)
ACCAG529912AG529913
length771720
length of high quality
(start - end)
343 (68 - 410)59 (252 - 310)
definitionCHROMAT_FILE: MSMg01no439_j13.b1 PHD_FILE: MSMg01no439_j13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:46 2005CHROMAT_FILE: MSMg01no439_j13.g1 PHD_FILE: MSMg01no439_j13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCANATATCCGCGGAA
TTCAGAAAGTTTCCTTCACTCCTGGCTCATAAAACAAAACAAGACAAAGC
AAGCAAACAAACAAACTAACAAAAGAAAAACAGAATAGGGAGTTAGACAG
GTCTGAATCTGTCCCCACAATGCCCCTATCTGTCCCATCCCAGTCCTCAA
GCTTCTATAAAGGCACTAAATGAAGGTGCTCTCAGGTGGTGGGCCCCCAT
GCTCACCCATGGCTCCCTCTGTGTTGTGTGCTGTGCTGTGTTCACCTGCT
GTGGCATCATGGTGCCTACCCTGCATGTCCCATGTGATGAGAACACACTG
TTACCACACTGTCAGTTTCCTCTCATGGAGAGTTAAACATCACCTACAAT
CCCAGAGGTAGGTGTAACGCACAGCCAGGGAGACTCCTCTTATATGGAGT
GATGGGAAGACATCCAGAGCATGCATCACTTGGTGTAGGATGCTGTGGTT
TGCATCTGGATTGTTTCTCACGCTCTTTGTGTTTAATGCTTTTTCCCACC
TTTGTTTCCCCTACACACCTGGTGTATACTGTTCTCTACCGTTTACTCCC
CCAATTAATTTGTTACCCTCTTTTCCCCCCCCTATTTTAACCCAATCTTT
CCCCTTCCTTTTTTTCCTCCTATTTTTCTTTTCATCCTTCTACTCTTTCT
TTAACCTCCATTTTTTTCCTCCCCCTCCACTTCTATTCTCCCCCTCTTTT
TCCCTATATATCCCTCTTTCN
ATGCAGTGCGAGGCCTGGNGGNCGCCGGGTTGCCGACCTTGCNNGAACNA
NAGAAGTTTACANGACCTGCGCNGNGGNNACAGACACCNAAGGAAGCCAC
GGAGAANCAAGCCANCAACCCCCCNCCNGGANACCNCCNGAACAGAGAAG
GCCCCCCTNCAAGGGACAGGAGGAGGGAAGCACATCCCGGCAGCAGGGAC
CACAAAGGGAAGCAGGGCAAAGACCCCCACCGNACCGGAANCTTTTTTCT
GGGAGGAATGGAGACAAGGAATGATCCATGAGAGCATGCTCCCAAGGGCC
TCTTCAGCCTTTTTTTTTCTCCAGAGCGNGCACNACCGCCCAAAAGCCCN
NCCCCATTTTACACCCCCGACCACGCCGGCGCCGGCAACGGCAANCNNCA
ACACGAGCCCACGACACACACNACAGACCCAAACCACAAAGCAGCAGGAA
CCGCAAAACCAGCCCACACCGAAACCCCANCACCCCCAGCCAAGACCGCA
CAGCCCAAACCAGAGCACAGACAGACGCCACGCAGGCAAAGAAAGAAGGC
CGCCCCCCCCCAGACCAGCCGACAAAACCCCCAAGCCAGGAGCCACCGAG
ACAAAAACCGGACCCGGGACGAAAGGCAGGCACCCCGAACGTTTTTTTTC
ACGCATCCCACCCCATTTACCTCCCTGTTCTCCCCTGCTGTTTCTCCTCC
CCTTTATTAACCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_j13.b1 MSMg01no439_j13.b1 CHROMAT_FILE:
MSMg01no439_j13.b1 PHD_FILE: MSMg01no439_j13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:46 2005
         (343 letters)



>mm_chr6_91269429_91270170
          Length = 742

 Score =  640 bits (331), Expect = 0.0
 Identities = 340/343 (99%), Gaps = 1/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcctggctcataaaacaaaacaagacaaagcaagcaaacaaacaaactaacaaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 598 actcctggctcataaaacaaaacaagacaaagcaagcaaacaaacaaacaaacaaaagaa 539

                                                                       
Query: 61  aaacagaatagggagttagacaggtctgaatctgtccccacaatgcccctatctgtccca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaacagaatagggagttagacaggtctgaatctgtccccacaatgcccctatctgtccca 479

                                                                       
Query: 121 tcccagtcctcaagcttctataaaggcactaaatgaaggtgctctcaggtggtgggcccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcccagtcctcaagcttctataaaggcactaaatgaaggtgctctcaggtggtgggcccc 419

                                                                       
Query: 181 catgctcacccatggctccctctgtgttgtgtgctgtgctgtgttcacctgctgtggcat 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 cat-ctcacccatggctccctctgtgttgtgtgctgtgctgtgttcacctgctgtggcat 360

                                                                       
Query: 241 catggtgcctaccctgcatgtcccatgtgatgagaacacactgttaccacactgtcagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 catggtgcctaccctgcatgtcccatgtgatgagaacacactgttaccacactgtcagtt 300

                                                      
Query: 301 tcctctcatggagagttaaacatcacctacaatcccagaggta 343
           ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 299 tcctctcatggagagttaaacatcaccaacaatcccagaggta 257


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 742
Length adjustment: 9
Effective length of query: 334
Effective length of database: 733
Effective search space:   244822
Effective search space used:   244822
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)