Query= MSMg01no439_o03.b1 MSMg01no439_o03.b1 CHROMAT_FILE:
MSMg01no439_o03.b1 PHD_FILE: MSMg01no439_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:07 2005
(386 letters)
>mm_chr6_27742562_27743347
Length = 786
Score = 688 bits (356), Expect = 0.0
Identities = 376/384 (97%), Gaps = 4/384 (1%)
Strand = Plus / Plus
Query: 5 gaattctcagga--tttctcataaacagaatgatgttgatactttggtgtgatctggctg 62
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcaggacatttc--ataaacagaatgatgttgatactttggtgtgatctggctg 262
Query: 63 cctcagaaaaatccctgtgtcactcagaaaagactttgtggggctacacgtcgggaagca 122
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 263 cctcagaaaaatccctgtgccactcagaaaagactttgtggggctacacgtctggaagca 322
Query: 123 tggtgctcagaggcaaaggtgtcagtgtatgtaaagagctctggcagtatctttcacaca 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tggtgctcagaggcaaaggtgtcagtgtatgtaaagagctctggcagtatctttcacaca 382
Query: 183 tattcagtagaaaagaaggaaagagagaaggaagaagttttatttaaatttaaataattc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tattcagtagaaaagaaggaaagagagaaggaagaagttttatttaaatttaaataattc 442
Query: 243 ataagtaaatagggagacagagaaagagatgatatattgattccctaaacatgaatgaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ataagtaaatagggagacagagaaagagatgatatattgattccctaaacatgaatgaaa 502
Query: 303 ttaaaagttgagatagtttataagcaagatgagcaagttagcattttgcctcgtttggaa 362
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 503 ttaaaagttgagatagtatataagcaaggtgagcaagttagcattttgcctcgtttggaa 562
Query: 363 aggaatagtgtgatttgtgatctg 386
||||||||||||||||||||||||
Sbjct: 563 aggaatagtgtgatttgtgatctg 586
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space: 292929
Effective search space used: 292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_o03.g1 MSMg01no439_o03.g1 CHROMAT_FILE:
MSMg01no439_o03.g1 PHD_FILE: MSMg01no439_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:08 2005
(326 letters)
>mm_chr6_27914325_27915050
Length = 726
Score = 559 bits (289), Expect = e-164
Identities = 313/326 (96%), Gaps = 9/326 (2%)
Strand = Plus / Minus
Query: 1 tctctgtcaggaagcagagaggccatatgtatcttgtgactttgtgactctagaaagggg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tctctgtcaggaatcagagaggccatatgtatcttgtgactttgtgactctagaaagggg 365
Query: 61 aaagggctataggaaatcctaatgttaaaagctgttaaaaatgcaagagtaagttacaag 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 364 aaagggctataggaaatcctaatgttaaaaactgttaaaaatgcaagagtaagttacaag 305
Query: 121 aaatcttattgttaaacatgaagaagtaatagacatactgactaggattgactctgtcca 180
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 304 aaatcttattgttaaacatgaagaagtaatagacatattgactaggattgactctgtcca 245
Query: 181 taacctcattgttctaaaatagcaacttctgtgtggcctggtggtttgtttttgtttgtt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 244 taacctcattgttctaaaatagcaacttctgtgtggcctggtggtttgtttttg-----t 190
Query: 241 ttgttttgttttctgtgntatttcattttgtttcatttctttcttttttcttcctccttc 300
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttgttttgttttctgtgttatttcattttgtttcatttctttcttttttcttcctccttc 130
Query: 301 tactgtgngcgtgtgtgtgtgtgtgt 326
|||||| ||||||||||||||||
Sbjct: 129 tactgt----gtgtgtgtgtgtgtgt 108
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space: 227289
Effective search space used: 227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
