NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAATG
CGCGGGAAGTCAGCAAACAGATTTCCTGGGGATCAGGAAAAGACCCTCAA
GAAAATGGAGTAGGGGATATTGGCCATTATAGTTGGAGATGCCCAATTGG
TTCATCAGAGCTGGAAATGTGGACATTCACAGACTCTCAGAGTGGAGAGG
GAATATAAGATCATATATCACAGGTTTCCTAAGCTGCTCATTGGCCTGGT
TTGTATCCTTTGGTGACTCATGACTAACATCTATCCCAAAGGCTCAGCAT
ATGTGCTGTGACAGCTTTGTGTCCCCATTTTAAATGTTATCTCTTAGAAT
AAACTTCTCAACAAAGATCCTGACTTGTTTTAACTGGATATTTTATTTAT
TTACGTTTCAAATCTTATCAGCTTTCCTAGTTTCCCCTCTGCAAACCCCT
ATCCCATGCCCCCTTACCCTGCTTCTATGAAGGCACTTCCCCACCCACTG
ATCCACTCCTGCCTCACTGCCCTAGCAATCCTCTACAGTGGGGCATCAAG
GCTTCACAGTACCAAGGACCTCCCCTCCCATTGGTGCCAGATAAGACTTT
TTCAGCTCCTTCAGTCCTTCCCTTAACTCCTCCATTAAGATTCCTAGGCT
CAGCCCCATGGATAGCTGTGAGCATGCACATCTGTGTTGGTCAGGATCTG
GGAGAGTCTCTCAGGAGACAGCTGTATCATGACCCTGTTAGCAAGTTCTT
CTTTGGCTN

NCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACAACCACACATGTTGTGGAT
TCCCACACAACTGTACAAAAACTACCCAAAACTTTTGGCTAGATACAAGC
AGAAGGAAATGTGCGTATACACGTGTGCATGGTTGAAGTGCAAACATCTG
GTTTCTTTGGAAAGTCGGTTATGCCAAATTGATGTTTTGCTCGGGCACAC
AGGATGTAAGGGGAGGTGCTAATGCTAAGGTCTAGTTCCCTAACTGGTTC
TTAGTTTTGTCAACAAAGAAGGAGCCAATTTTTTTGCAGAAGGTATAGGT
GGGACTTCTGGGTCCCGGGAGGAAAAGGCAAGTACAAAGAAGAGGGTTTT
TTGTTTTGTTTTTGTTTTCCCCATGCTTTGGAATGAGAAGAAAGCAGCAG
TCATGTAAGGTCTTGGGGCAGCTAGGGCCTGCAGCCTCCACTATGGGCGG
NGGCTGAGGTTGGCAGGGGCTAGCTGATACAGGCTACTAAGTTTAGGACA
GGAGGAGAAACGTTGATATTAATTGATGAGGGCATGCTTTTCTAGGCCAG
ATAATCTGCTCCCAGTATCTGTGTCTATCCAGCAAGTTCTAAAATTAAAA
TAGCTGCCTGTCATGCCCTTTATCCGGATTCTTAGTTCTTCGCAACTATC
TCTGGAGTATTGTACATCCTCCTGTTATCCTAAAGCTGTATTAATGAATT
AGCCCCCTTT

Query= MSMg01no440_k04.b1 MSMg01no440_k04.b1 CHROMAT_FILE:
MSMg01no440_k04.b1 PHD_FILE: MSMg01no440_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:09 2005
         (569 letters)



>mm_chr6_48210934_48211902
          Length = 969

 Score =  920 bits (476), Expect = 0.0
 Identities = 491/496 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcaggaaaagaccctcaagaaaatggagtaggggatattggccattatagttggagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 atcaggaaaagaccctcaagaaaatggagtaggggatattggccattatagttggagatg 437

                                                                       
Query: 61  cccaattggttcatcagagctggaaatgtggacattcacagactctcagagtggagaggg 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 436 cccaattggttcatcagagctggaaatgtggacattcacaaactctcagagtggagaggg 377

                                                                       
Query: 121 aatataagatcatatatcacaggtttcctaagctgctcattggcctggtttgtatccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aatataagatcatatatcacaggtttcctaagctgctcattggcctggtttgtatccttt 317

                                                                       
Query: 181 ggtgactcatgactaacatctatcccaaaggctcagcatatgtgctgtgacagctttgtg 240
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 316 ggtgactcattactaacatctatcccaatggctcagcatatgtgctgtgacagctttgtg 257

                                                                       
Query: 241 tccccattttaaatgttatctcttagaataaacttctcaacaaagatcctgacttgtttt 300
           ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 256 tccccattttaaatgttatctcttagaataaacgtcccaacaaagatcctgacttgtttt 197

                                                                       
Query: 301 aactggatattttatttatttacgtttcaaatcttatcagctttcctagtttcccctctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aactggatattttatttatttacgtttcaaatcttatcagctttcctagtttcccctctg 137

                                                                       
Query: 361 caaacccctatcccatgcccccttaccctgcttctatgaaggcacttccccacccactga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 caaacccctatcccatgcccccttaccctgcttctatgaaggcacttccccacccactga 77

                                                                       
Query: 421 tccactcctgcctcactgccctagcaatcctctacagtggggcatcaaggcttcacagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76  tccactcctgcctcactgccctagcaatcctctacagtggggcatcaaggcttcacagta 17

                           
Query: 481 ccaaggacctcccctc 496
           ||||||||||||||||
Sbjct: 16  ccaaggacctcccctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space:   536081
Effective search space used:   536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no440_k04.g1 MSMg01no440_k04.g1 CHROMAT_FILE:
MSMg01no440_k04.g1 PHD_FILE: MSMg01no440_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:09 2005
         (421 letters)



>mm_chr6_48023101_48023921
          Length = 821

 Score =  799 bits (413), Expect = 0.0
 Identities = 419/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcacaaccacacatgttgtggattcccacacaactgtacaaaaactacccaaaacttttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcacaaccacacatgttgtggattcccacacaactgtacaaaaactacccaaaacttttg 260

                                                                       
Query: 61  gctagatacaagcagaaggaaatgtgcgtatacacgtgtgcatggttgaagtgcaaacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctagatacaagcagaaggaaatgtgcgtatacacgtgtgcatggttgaagtgcaaacat 320

                                                                       
Query: 121 ctggtttctttggaaagtcggttatgccaaattgatgttttgctcgggcacacaggatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggtttctttggaaagtcggttatgccaaattgatgttttgctcgggcacacaggatgt 380

                                                                       
Query: 181 aaggggaggtgctaatgctaaggtctagttccctaactggttcttagttttgtcaacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggggaggtgctaatgctaaggtctagttccctaactggttcttagttttgtcaacaaa 440

                                                                       
Query: 241 gaaggagccaatttttttgcagaaggtataggtgggacttctgggtcccgggaggaaaag 300
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggagccaattgctttgcagaaggtataggtgggacttctgggtcccgggaggaaaag 500

                                                                       
Query: 301 gcaagtacaaagaagagggttttttgttttgtttttgttttccccatgctttggaatgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcaagtacaaagaagagggttttttgttttgtttttgttttccccatgctttggaatgag 560

                                                                       
Query: 361 aagaaagcagcagtcatgtaaggtcttggggcagctagggcctgcagcctccactatggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaaagcagcagtcatgtaaggtcttggggcagctagggcctgcagcctccactatggg 620

            
Query: 421 c 421
           |
Sbjct: 621 c 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)