BAC Information

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BAC

Clone NameMSMg01-441B21
Chromosome6 (Build37)
Map Location 98,371,503 - 98,513,783
singlet/doubletdoublet
Overlap geneLOC665963
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441B21.T7 (MSMg01no441_b21.b1)MSMg01-441B21.TJ (MSMg01no441_b21.g1)
ACCAG531074AG531075
length778782
length of high quality
(start - end)		554 (68 - 621)504 (72 - 575)
definitionCHROMAT_FILE: MSMg01no441_b21.b1 PHD_FILE: MSMg01no441_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:47 2005CHROMAT_FILE: MSMg01no441_b21.g1 PHD_FILE: MSMg01no441_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,513,230 - 98,513,783)(98,371,503 - 98,372,006)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATACTGATATTCCAAATTCAATCAGGGCTACCAAGTTTTCTGTCTGTC
ATTATTACCTCTTACCTGTTGGAACTTCTAACATGTTGACTTGCATTCTA
GATATACGAGGTATGACAGACCATCACGTAACAACTCATTTGCTTTATGT
TAGACTCATTAGCTTTATGTCAACATACCCTAACATTGCTCTTCTCAACT
GAAATGGCTGCTTTGCACCCTACAGTCATTGTTTGCAGGTCCACTGTCTG
TATTGTTATAGCATACAGCTTTACTCATACATTTGAATGTATACATGCTC
ACTAAAGCCCCTGGGCGCCTCCCTGGTGATTTAATTAGTAGAGGATCTAT
CTCTTGGCTTTTGTGTGGATGCCTTTGCTGGGCTAGGTTTGTGGCTTTGG
CTGATGGGTTCTTGCCTTCTGATTTGGAGCTGATGATGATAGCTTGTTCA
CTGTGTCTTACTGCAAATACTGTCCACATTTTGTTGTCTAGTTGTTCAGC
TATTTGAGGAGATTGAGAAACATCAAGACATGATAAGAACATTGCAGTGG
GCATCGCAATCATCCTCTCCTAGATAGGTCTTATTGTATGCATCATTTTA
TTTAATCTTCACAAGCACGATAACCCGAATTAGCGTGTATAGAGGCCCTG
CAGATGAGAAATAACAATCTAAGAATAAAAGGCCACTTTGGCTGTAAGGC
TGCCTGACTCTGTAACCCGGACTCCTAA

TGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTCCAAAGGTTAGTGTGTGGCTCTCCGTC
AAATCATTTAATGCGAGTTTTGGTTGCTATTTATTCTACTGCAACGTAAC
TGTATTTAAGGAATAAGGCATATTTCTTAACTAAAACACCATTTGAAATT
TTGTACTTGCTTTCATAACTTGATTGGCTCAGTTAGTATTTCCCCAGTGC
TTGATATATGCGAGCCAGTGGTTTAATATTTTAATGCATGCAACATCACA
GTTTTAGGTCTTTTTAATTATAACCTCACAGAAACCCAATGTGGATGTTA
CAATGTTTTATGAAGATTGACAGACATATTGCTGGTTTTTCTGAAAGCTT
TTTTTAAAAATGTTTCATTTCTTTAAAAAATATATATTGCTGGGGCTTAG
GGAGAAAGCTCAGTTTTTACATGATCATGAATTCCCAAGCTCAGTCCCTA
CCATCCATGTTATTTATAAGCAGGACATGGTGATATGAGGAGACAAAGAC
GAGAAGACCCTTGGTTCTCACCAGCTAAGATATGTGGCACCTAAGGAAAA
CTCTGGCTTCCAAACATGTGTGCAGTCACACACAAGTAAAATAATGTATT
TCTACATAGCTTTTGGTGGACATGTTCTCTAATTAGTCACGAGGGTCCCC
AGTTATAAGTGTTTAAAGGTATAAAACACCCCTCACATTTGCACTTTTTT
TGATTGGTTAAGGAACTTTTCCCAATTAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_b21.b1 MSMg01no441_b21.b1 CHROMAT_FILE:
MSMg01no441_b21.b1 PHD_FILE: MSMg01no441_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:47 2005
         (554 letters)



>mm_chr6_98513030_98513983
          Length = 954

 Score = 1033 bits (534), Expect = 0.0
 Identities = 549/554 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcaatcagggctaccaagttttctgtctgtcattattacctcttacctgttggaactt 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 754 attcaatcagggctaccaagttttctgtctgtcattactacctcttacctgttggaactt 695

                                                                       
Query: 61  ctaacatgttgacttgcattctagatatacgaggtatgacagaccatcacgtaacaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 ctaacatgttgacttgcattctagatatacgaggtatgacagaccatcacgtaacaactc 635

                                                                       
Query: 121 atttgctttatgttagactcattagctttatgtcaacataccctaacattgctcttctca 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 634 attagctttatgttagactcattagctttatgtcaacataccctaacattgctatcctca 575

                                                                       
Query: 181 actgaaatggctgctttgcaccctacagtcattgtttgcaggtccactgtctgtattgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 actgaaatggctgctttgcaccctacagtcattgtttgcaggtccactgtctgtattgtt 515

                                                                       
Query: 241 atagcatacagctttactcatacatttgaatgtatacatgctcactaaagcccctgggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atagcatacagctttactcatacatttgaatgtatacatgctcactaaagcccctgggcg 455

                                                                       
Query: 301 cctccctggtgatttaattagtagaggatctatctcttggcttttgtgtggatgcctttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cctccctggtgatttaattagtagaggatctatctcttggcttttgtgtggatgcctttg 395

                                                                       
Query: 361 ctgggctaggtttgtggctttggctgatgggttcttgccttctgatttggagctgatgat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ctgggctaggtttgtggctttggctgatgggttcttgccttctgatttggagctgatgat 335

                                                                       
Query: 421 gatagcttgttcactgtgtcttactgcaaatactgtccacattttgttgtctagttgttc 480
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gatagcttgttcactgtgttttactgcaaatactgtccacattttgttgtctagttgttc 275

                                                                       
Query: 481 agctatttgaggagattgagaaacatcaagacatgataagaacattgcagtgggcatcgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 agctatttgaggagattgagaaacatcaagacatgataagaacattgcagtgggcatcgc 215

                         
Query: 541 aatcatcctctcct 554
           ||||||||||||||
Sbjct: 214 aatcatcctctcct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no441_b21.g1 MSMg01no441_b21.g1 CHROMAT_FILE:
MSMg01no441_b21.g1 PHD_FILE: MSMg01no441_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:47 2005
         (504 letters)



>mm_chr6_98371303_98372206
          Length = 904

 Score =  959 bits (496), Expect = 0.0
 Identities = 502/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccaaaggttagtgtgtggctctccgtcaaatcatttaatgcgagttttggttgctatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccaaaggttagtgtgtggctctccgtcaaatcatttaatgcgagttttggttgctatt 260

                                                                       
Query: 61  tattctactgcaacgtaactgtatttaaggaataaggcatatttcttaactaaaacacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattctactgcaacgtaactgtatttaaggaataaggcatatttcttaactaaaacacca 320

                                                                       
Query: 121 tttgaaattttgtacttgctttcataacttgattggctcagttagtatttccccagtgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgaaattttgtacttgctttcataacttgattggctcagttagtatttccccagtgct 380

                                                                       
Query: 181 tgatatatgcgagccagtggtttaatattttaatgcatgcaacatcacagttttaggtct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatatatgcgagccagtggtttaatattttaatgcatgcaacatcacagttttaggtct 440

                                                                       
Query: 241 ttttaattataacctcacagaaacccaatgtggatgttacaatgttttatgaagattgac 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttaattagaacctcacagaaacccaatgtggatgttacaatgttttatgaagattgac 500

                                                                       
Query: 301 agacatattgctggtttttctgaaagctttttttaaaaatgtttcatttctttaaaaaat 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 agacatattgctggtttttctgaaagcttttttaaaaaatgtttcatttctttaaaaaat 560

                                                                       
Query: 361 atatattgctggggcttagggagaaagctcagtttttacatgatcatgaattcccaagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatattgctggggcttagggagaaagctcagtttttacatgatcatgaattcccaagct 620

                                                                       
Query: 421 cagtccctaccatccatgttatttataagcaggacatggtgatatgaggagacaaagacg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtccctaccatccatgttatttataagcaggacatggtgatatgaggagacaaagacg 680

                                   
Query: 481 agaagacccttggttctcaccagc 504
           ||||||||||||||||||||||||
Sbjct: 681 agaagacccttggttctcaccagc 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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