BAC Information

Click to search

BAC

Clone NameMSMg01-442G04
Chromosome6 (Build37)
Map Location 77,788,708 - 77,957,692
singlet/doubletdoublet
Overlap geneCtnna2
Upstream geneLrrtm1
Downstream geneLOC668169, EG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442G04.T7 (MSMg01no442_g04.b1)MSMg01-442G04.TJ (MSMg01no442_g04.g1)
ACCAG532044AG532045
length787873
length of high quality
(start - end)
381 (74 - 454)199 (81 - 279)
definitionCHROMAT_FILE: MSMg01no442_g04.b1 PHD_FILE: MSMg01no442_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:31 2005CHROMAT_FILE: MSMg01no442_g04.g1 PHD_FILE: MSMg01no442_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,957,371 - 77,957,692)(77,788,708 - 77,788,903)
sequence
NGCCCTCTATAATGGCGGGCGGTATACGACGCACTATCCAAGACCATCCG
CGGAATTCACCAATTTCCCACACAGACTAACAGAATGAGTACATAAGCAG
GATCTATCATTCTGCTACAAACAAGAAGCACACCTCACTAACAAAGATTG
ACACTATCTCAGAGTAAAGGGCTGGAAAAAGTTTTTCCAACCAAATGGAC
TCAAGAAACTAATACCTAATAGAAAAGACTTTCAATCAAAAGTTGTCAAA
AGAGATGGTAAAGGACAATTCATACTCATCAAAGGAAAAATCCACCACAA
TGACATCTCAATCTTGAACAGCTGTTTCCTAATGAAAATTAAGAGTAGAC
GTCTGAGATGCATTTTGCCATGACTTAGCATAGAGTATTAGTTCCTCCTG
CTCCAGTGTAACATCAGCCTTGTAGCAGTAGAAACAGCATTATTTTTTAC
TTAAAACTGCAGACAGTTGCTACTGGCAAAGATTCCCACCAAATCACAGA
AATATTTTTAAAACCTAACAAAAATATTGAGCGCATTGAAGAAATAACAA
ACATCACTCCCATAGGCTTACTTCCCATATTGGGTTATCTGCCCAATTCT
CAACACTGAACGAACCTATTTTTCTGGTTTTCTCAACCCCCACCCCCACC
CATTTTTTCCCTCCCCTTTTCTCCCACCTTCATCACTTATCTTTTTTTTT
ATTGTGTTCTTCCTAATACATCTCTCTTTTTTTTTTCTCCCTCCCCCTCT
TTAATGTATTCTCCCTCTGATTTACTTCTCCCCTTTN
TTGTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAGTTTCATCACTAAGAG
AGTTAGTTTGTAGTCTCAAATCATGATAATGGTTTACTGATTGAGTCTGG
TTTTCCTAGGGAAGGCATGGGCAGATGGTGCCAGTTAACAGAGGGTAAAT
GTATGCCAAGCTCAGTAAAATTACACCACAGTGCTCTTGGATATCTGTGA
TTGAAAGCATCTGCCTCTAACAGTGGTGAGATGGATAACTACTATTGTAT
TCCAGGGCGTCTTGCGCCTGCCTTTTTTTTTTTTCTTCTTCGATTCTCCC
TTTCTTCCTCTCCCCTGTTTCTTTCCCCTCTCTCCATTTTACTTCTTTCT
TCCTCTGCCTTCACACTCTTTTTCCCACCTTCATCTTCCCCTTCCTTCCT
TCTTTCTTCTCTCTCACTTCCTTTCTCCTCCCTTTTTCTTTTTCTCTATT
TCTTTTCTTCATCTTTCCTCCTTCCACCCTTCTTTCCCCTTTTTTTTTTA
TTCTCCCCCCCCTTCGTCTTTTCTCTCCCCTCACCTTACCCTCTTCTCTT
CATCCCCCATTCTTTCCCCCCACCCCATTTTTTCTCTTTTCACTTTCTCT
CTCCTTTTTTCCTTTTTTTTTTCTTACTTCCACTCCCTCTTTCTTCTCTT
CTTCCATCCTTCTTCCTTTTGCTCTCTTTTCTCTTTTTCCCCCTACTTTT
TTTCGTTTTTCTCTACCCTCCTTTCCCTTCTTCTCCCACTCCTCTCTTCC
TCTTTCTTGTTTCTCCTCCCCTCTTTACTTCCCTTTTCTCTCTCTTTATT
CCCTTCTTCTTCTCTCCCTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_g04.b1 MSMg01no442_g04.b1 CHROMAT_FILE:
MSMg01no442_g04.b1 PHD_FILE: MSMg01no442_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:31 2005
         (381 letters)



>mm_chr6_77956912_77957692
          Length = 781

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%)
 Strand = Plus / Minus

                                                                       
Query: 60  cctcactaacaaagattgacactatctcagagtaaagggctggaaaaagtttttccaacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cctcactaacaaagattgacactatctcagagtaaagggctggaaaaagtttttccaacc 722

                                                                       
Query: 120 aaatggactcaagaaactaatacctaatagaaaagactttcaatcaaaagttgtcaaaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aaatggactcaagaaactaatacctaatagaaaagactttcaatcaaaagttgtcaaaag 662

                                                                       
Query: 180 agatggtaaaggacaattcatactcatcaaaggaaaaatccaccacaatgacatctcaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agatggtaaaggacaattcatactcatcaaaggaaaaatccaccacaatgacatctcaat 602

                                                                       
Query: 240 cttgaacagctgtttcctaatgaaaattaagagtagacgtctgagatgcattttgccatg 299
           |||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 601 cttgaacagctacttcctaatgaaaattaagagtagaagtctgagatgcattttgccatg 542

                                                                       
Query: 300 acttagcatagagtattagttcctcctgctccagtgtaacatcagccttgtagcagtaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 541 acttagcatagagtattagttcctcctgctccagtgtaacatcagccttgtagtagtaga 482

                                 
Query: 360 aacagcattattttttacttaa 381
           ||||||||||||||||||||||
Sbjct: 481 aacagcattattttttacttaa 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no442_g04.g1 MSMg01no442_g04.g1 CHROMAT_FILE:
MSMg01no442_g04.g1 PHD_FILE: MSMg01no442_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:31 2005
         (199 letters)



>mm_chr6_77788508_77789106
          Length = 599

 Score =  364 bits (188), Expect = e-105
 Identities = 194/196 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagtttcatcactaagagagttagtttgtagtctcaaatcatgataatggtttactga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagtttcatcactaagagagttagtttgtagtctcaaatcatgataatggtttactga 260

                                                                       
Query: 61  ttgagtctggttttcctagggaaggcatgggcagatggtgccagttaacagagggtaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagtctggttttcctagggaaggcatgggcagatggtgccagttaacagagggtaaat 320

                                                                       
Query: 121 gtatgccaagctcagtaaaattacaccacagtgctcttggatatctgtgattgaaagcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 gtatgccaagctcagtaaaattacaccacagtgctcttggatatctgtgattgaaagcag 380

                           
Query: 181 ctgcctctaacagtgg 196
           ||| ||||||||||||
Sbjct: 381 ctgtctctaacagtgg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)