Query= MSMg01no442_k14.b1 MSMg01no442_k14.b1 CHROMAT_FILE:
MSMg01no442_k14.b1 PHD_FILE: MSMg01no442_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:55 2005
(269 letters)
>mm_chr6_15513936_15514604
Length = 669
Score = 431 bits (223), Expect = e-125
Identities = 244/251 (97%)
Strand = Plus / Plus
Query: 19 tatgcctgtttttaattcctcagagtaattagatcttgagaatttcctgtaggttgctaa 78
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 tatgcctgattttaattcctcagagtaattagatcttgagaatttcctgtaggttgctaa 278
Query: 79 gaattcagctcttcatttagaaggtcactatgatgttataatctgtccttctatgtattc 138
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 279 gaattcagctcttcatttagaaagccactatgatgttataatctgtccttctatgtattc 338
Query: 139 tgtcaagaagaggttcaggctatttagcataacacaatgccagaaataaaggttcatgga 198
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtcaagaaaaggttcaggctatttagcataacacaatgccagaaataaaggttcatgga 398
Query: 199 tgctcaaagttacttgggttggtcttcacagcctaaagctactggatttgtgttacatgg 258
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 399 tgcccaaagttacttgggttgatcttctcagcctaaagctactggatttgtgttacatgg 458
Query: 259 ctttccatgcc 269
|||||||||||
Sbjct: 459 ctttccatgcc 469
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no442_k14.g1 MSMg01no442_k14.g1 CHROMAT_FILE:
MSMg01no442_k14.g1 PHD_FILE: MSMg01no442_k14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:55 2005
(245 letters)
>mm_chr6_15681682_15682326
Length = 645
Score = 455 bits (235), Expect = e-132
Identities = 244/250 (97%), Gaps = 5/250 (2%)
Strand = Plus / Minus
Query: 1 cttcaagaggaaggtctgattggattcaaaatg-----aanaaaaaaaaacaaaaacaaa 55
||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 516 cttcaagaggaaggtctgattggattcaaaatgaaaaaaaaaaaaaaaaacaaaaacaaa 457
Query: 56 aaataaacaaagcaactataaatggaccagcttatctattgagggagccaaaggaaaatg 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaataaacaaagcaactataaatggaccagcttatctattgagggagccaaaggaaaatg 397
Query: 116 tgcataagcaaaacggaaatatttacaaaaatagaagtacgtgattgagtatgaacatta 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgcataagcaaaacggaaatatttacaaaaatagaagtacgtgattgagtatgaacatta 337
Query: 176 agaaaggtataaaatgcattggtggtttaaaatacgtggtagtaaatcagagagggagag 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agaaaggtataaaatgcattggtggtttaaaatacgtggtagtaaatcagagagggagag 277
Query: 236 aaggatagta 245
||||||||||
Sbjct: 276 aaggatagta 267
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
