GCGCCCTAAATTTGCGGCGCTAAACGACNCACAAATTTCCGACCAGGCGG
AANNCNNNTTTCTTACCGACATACAAGGNGGNCTAAATTCAATTCATCTG
GCTTACAATATTTAGCATTTTGCAAGCTTGGGATTAAACCAGAAAGAGCA
AGAAAACAAAATACTCTCATTTACAATGCAAGTAAAACTTCTTCAAAGGG
AACCAAGTCACAGTAGCTGGGCAAGAAGTCCGTCCCATTTTCTTTACTAA
ATTTTCATTGGCTTGGTAGCACTGTGCCATCTATTCCAGGCACGGCTTTA
AATTGCCAACTTCCATCGCTGTCTTTAATGTTTTTAAGACTGAATGTATA
AAGTACCACTTGCAGGATAATATCTCGGAGGAGAAACGAACCACGCATAT
CTTGTCCTCAGGTATTATGCACCGTGACATTTATGAATATCTTACCATAC
CGCTTATCTCTCCTCTTTATACGACCATCTTCCCCTCACTTATTTTCCCC
CCAAGAATAACAACCTTGCTTGTACTCCCGCCTCCTCTCACAACCCATAC
CTTTTATTTGTTGGCCCCCCTTCTTGGCTGGTCCTCCAAAATGGTTTCTT
TTTTATCTCCCCCACACCCCCCACGTATTCTTCCTCCCACGCTTGCTTTC
CCCCACTTCCCTCTATCCCCACCATCTTTCCCACCAGCCACTGAGCCAAA
TCACGGCCCTCCTTTCTACCACACCACAAACCCCTTTATCCTTAACTCCA
TATACCCACATTCTCTTACACACCCTGAGTAATCTTCCG

TTCTCGATGCAACGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATAACAAGAGACAAAAGAAA
ACTCTAGCTGATCATCCCGGGGGAATGGAACTTGGGAATCCTTTGCCAAA
ACTATGATGAAAGCTAGACTTCAATCAGAAGGTGGCTTTTATCCTTGGAG
ACATCAGTAAGCTGACCTTAACAAAACTTAGCTGTGCTCTCTTTAGCCTT
AAATGTGTGGGAACCAGACGCGTGTCTCCACAAGCCAGGATTTTTATTAC
AGAACTAACCCAAACTCCTCATAGAATATCATAAATTCACAGTAACATGT
CCATTGAGACTTTTACTTACCAAATGATGGCAAGATACACATATTTTCCT
AGGTTAGTGTTCCGCTACCACCATCTAACAGACCATTTGATGACCTTGCC
TATGGCCCTTAGTGTCTTTCTATTTGTCCTGTTCTTGACCCCGCCACTTT
TTTTGTACCCTTTCTTCTATTTAACACTCGTTCTCCCTACAGTTTTTCAC
CGTTACCTTTTTTATTCTCCTCTCTCTTTCCGGCGTGTCCTCTGGTCCCC
TCCCCCTCATTAATAACCCGTTCCCTTCCCATTATCCTCCTTTTACATTC
GCACTTTCCCTTAGACATTTTCTTTTCACCGTCTCTCTCCCTTATCCCCG
CCTCTTTTTCCTATATCCTTTTATTTCTACCCCCTATCCCTTCCCTACCT
TCTACCTCATTTCTG

Query= MSMg01no443_l03.b1 MSMg01no443_l03.b1 CHROMAT_FILE:
MSMg01no443_l03.b1 PHD_FILE: MSMg01no443_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:22 2005
         (137 letters)



>mm_chr6_101344183_101344719
          Length = 537

 Score =  234 bits (121), Expect = 2e-66
 Identities = 133/137 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaattcaattcatctggcttacaatatttagcattttgcaagcttgggattaaaccag 60
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ctaaattcaattcatctggtttacaatatttagcattttggaagcttgggattaaaccag 260

                                                                       
Query: 61  aaagagcaagaaaacaaaatactctcatttacaatgcaagtaaaacttcttcaaagggaa 120
           |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 aaagagtaagaaaacaaaatactctcatttacaatgtaagtaaaacttcttcaaagggaa 320

                            
Query: 121 ccaagtcacagtagctg 137
           |||||||||||||||||
Sbjct: 321 ccaagtcacagtagctg 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 137
Length of database: 537
Length adjustment: 8
Effective length of query: 129
Effective length of database: 529
Effective search space:    68241
Effective search space used:    68241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no443_l03.g1 MSMg01no443_l03.g1 CHROMAT_FILE:
MSMg01no443_l03.g1 PHD_FILE: MSMg01no443_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:22 2005
         (243 letters)



>mm_chr6_101487918_101488560
          Length = 643

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcataacaagagacaaaagaaaactctagctgatcatcccgggggaatggaacttggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttcataacaagagacaaaagaaaactctagctgatcatcccgggggaatggaacttggga 384

                                                                       
Query: 61  atcctttgccaaaactatgatgaaagctagacttcaatcagaaggtggcttttatccttg 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 atcctttgccaaaactatgatgaaagcaagacttcaatcagaaggtggcttttatccttg 324

                                                                       
Query: 121 gagacatcagtaagctgaccttaacaaaacttagctgtgctctctttagccttaaatgtg 180
           |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 323 gagacatcagtaagctgaccttaagaaaacttagttgtgctctctttagccttaaatgtg 264

                                                                       
Query: 181 tgggaaccagacgcgtgtctccacaagccaggatttttattacagaactaacccaaactc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 263 tgggaaccagacgcgtgtctccataagccaggatttttattacagaactaacccaaactc 204

              
Query: 241 ctc 243
           |||
Sbjct: 203 ctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)