Query= MSMg01no444_a24.b1 MSMg01no444_a24.b1 CHROMAT_FILE:
MSMg01no444_a24.b1 PHD_FILE: MSMg01no444_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:51 2005
(506 letters)
>mm_chr6_83470333_83471238
Length = 906
Score = 903 bits (467), Expect = 0.0
Identities = 490/501 (97%), Gaps = 8/501 (1%)
Strand = Plus / Minus
Query: 6 gaattctcgtggtgggtgaattttcttaactactaaagaaaatatgataatgaaaaatca 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaattctcgtggtaggtgaattttcttaactactaaagaaaatatgataatgaaaaatca 539
Query: 66 ttcagagcagaccctagaaacagacagatgaaaatgaagtttgtcttctctgtccacagg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ttcagagcagaccctagaaacagacagatgaaaatgaagtttgtcttctctgtccacagg 479
Query: 126 catcgtcctggattcgggggatggcgtcacccacaatgtccccatctatgagggctatgc 185
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 catcgttctggattcgggggatggcgtcacccacaatgtccccatctatgagggctatgc 419
Query: 186 actgccccatgccatcatgcgtcttgacctggctggacgggatctcacagactacctcat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 actgccccatgccatcatgcgtcttgacctggctggacgggatctcacagactacctcat 359
Query: 246 gaagattctcacagaaagaggctattcctttgtgaccacaggtacctgcccctttcctca 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaagattctcacagaaagaggctattcctttgtgaccacaggtacctgcccctttcctca 299
Query: 306 tcaaagttgaactcaaaatccaatctcatctaggacccgaagttctcgggactgatggga 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcaaagttgaactcaaaatccaatctcatctaggacccgaagttctcgggactgatggga 239
Query: 366 attctgtggctctgtcctcaggctgacctgcagccctgcagtgttaagacagcctagttg 425
|||||| |||||||||||||||||||||||||| || || |||||||||||||||
Sbjct: 238 attctgcggctctgtcctcaggctgacctgcag---tg--gt---aagacagcctagttg 187
Query: 426 gaggatgaaggttccccgtggagatgctctggggaggagaacaaggcttagaactagctt 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gaggatgaaggttccccgtggagatgctctggggaggagaacaaggcttagaactagctt 127
Query: 486 ccttctactgtgctctgccaa 506
|||||||||||||||||||||
Sbjct: 126 ccttctactgtgctctgccaa 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_a24.g1 MSMg01no444_a24.g1 CHROMAT_FILE:
MSMg01no444_a24.g1 PHD_FILE: MSMg01no444_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:51 2005
(513 letters)
>mm_chr6_83312655_83313568
Length = 914
Score = 963 bits (498), Expect = 0.0
Identities = 510/514 (99%), Gaps = 1/514 (0%)
Strand = Plus / Plus
Query: 1 aaagagataagaaataaaacacatccaaaagctacaagggttctagatcaagtctaaagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagagataagaaataaaacacatccaaaagctacaagggttctagatcaagtctaaagc 260
Query: 61 attagtatgctgtgagacagccagtccttgcttctttaaacacaagaaaaataaatgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attagtatgctgtgagacagccagtccttgcttctttaaacacaagaaaaataaatgaca 320
Query: 121 tcactcccgtctctctccctctacccccaaaagaaaaaggaaaaaaaatctatattggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactcccgtctctctccctctacccccaaaagaaaaaggaaaaaaaatctatattggaa 380
Query: 181 tcaagaaaatttgggatgtccagatgagccaattattatctgtccccatatgaagagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaagaaaatttgggatgtccagatgagccaattattatctgtccccatatgaagagtga 440
Query: 241 gggttcctcctgaatgacgagcagtcggagcgagaagagcatgactgacagacaccctac 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggttccccctgaatgacgagcagtcggagcgagaagagcatgactgacagacaccctac 500
Query: 301 agaaagcatccctgatatcagaatagaagcgaacgaggagcaggctgaa-agatccacag 359
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 agaaagcatccctgatatcagaatagaagcgaacgaggagcaggctgaacagatccacag 560
Query: 360 gcacagagcccagaacccggcttctgtgctgaggtctcccctcaggtgagaagcctatgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcacagagcccagaacccggcttctgtgctgaggtctcccctcaggtgagaagcctatgg 620
Query: 420 ctccgccccctcaggaaggcggcgctcccagaatcatctatgcacagatgggttggcgta 479
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 621 ctccgccccctcaggaaggcggcactcccagaatcatctatgcgcagatgggttggcgta 680
Query: 480 tgcacctccaatgtgttatttggtccagggtatg 513
||||||||||||||||||||||||||||||||||
Sbjct: 681 tgcacctccaatgtgttatttggtccagggtatg 714
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 914
Length adjustment: 10
Effective length of query: 503
Effective length of database: 904
Effective search space: 454712
Effective search space used: 454712
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
