Query= MSMg01no444_d04.b1 MSMg01no444_d04.b1 CHROMAT_FILE:
MSMg01no444_d04.b1 PHD_FILE: MSMg01no444_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:02 2005
(433 letters)
>mm_chr6_115543442_115544274
Length = 833
Score = 752 bits (389), Expect = 0.0
Identities = 421/433 (97%), Gaps = 6/433 (1%)
Strand = Plus / Plus
Query: 4 ggaattcactttgtatatccc--gctggcctcaaactcagagatccgcctgcctctgcct 61
||||||||||||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactttgtaga--ccaggctggcctcaaactcagagatccgcctgcctctgcct 261
Query: 62 ccctagtgctgcaattaaagtcatgcaccaccacgcccagctccttcctcttttttctca 121
|||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 262 ccctagtgctgcgattaaagtcgtgcaccaccatgcccagctccttcctcttttttctca 321
Query: 122 gataaacaaacgtaattgtttccctaaaggaatatccccc-aacctcctgcaggcatatc 180
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 322 gataaacaaacataattgtttccctaaaggaatatccccccaacctcctgcaggcatatc 381
Query: 181 catcttaggttgtaactagaaacaaaagtcaaaccagtgtacattggataagaataaata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 catcttaggttgtaactagaaacaaaagtcaaaccagtgtacattggataagaataaata 441
Query: 241 aataaataacccaccacatcggaagtaggctctttgagtccagcagtaccaggcagcctc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aataa-taacccaccacatcggaagtaggctctttgagtccagcagtaccaggcagcctc 500
Query: 301 aagtctctagaccagaggttctcaaaccttcctaatgctgtgaccctttaatacagtttc 360
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagtctctagaccaggggttctcaaaccttcctaatgctgtgaccctttaatacagtttc 560
Query: 361 tcatgttgtggggaccccaagcataaaattatttccattgctacttcttagctgtaattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatgttgtggggaccccaagcataaaattatttccattgctacttcttagctgtaattt 620
Query: 421 tgctactgttatg 433
|||||||||||||
Sbjct: 621 tgctactgttatg 633
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_d04.g1 MSMg01no444_d04.g1 CHROMAT_FILE:
MSMg01no444_d04.g1 PHD_FILE: MSMg01no444_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:02 2005
(351 letters)
>mm_chr6_115700981_115701731
Length = 751
Score = 609 bits (315), Expect = e-179
Identities = 342/355 (96%), Gaps = 8/355 (2%)
Strand = Plus / Minus
Query: 1 ctggtcgccatgctcccgcgaaaccagatcattagttaatttggaagacattgtgtctgg 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ctggtcgccatgctcccgcaaaaccagatcattagttaatttggaagacattgtgtctgg 492
Query: 61 aaggaggagccatagtgtatcttgaaggtaaaggggcttgtgttttatgtgtcttctcag 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aaggaggagccatagcgtatcttgaaggtaaaggggcttgtgttttatgtgtcttctcag 432
Query: 121 gctatggctggctagtgaggaggggagtacttttgattttcctgaccttggaatttgggt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 431 gctatggctggctagtgaggagggaagtacttttgattttcctgaccttggaatttgggt 372
Query: 181 ttccaaggagcatggtggactcagagaggaaacctggtgggcagggagaggactcagtag 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 371 ttccaaggagcatggtggactcagataggaaacctggtgggcagggagaggactcagtag 312
Query: 241 g----ttttgtacttgctatgtaaacaagagaatctgaattcagatccccaacactcaca 296
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gcaaa----gtacttgctatgtaaacaagagaatctgaattcagatccccaacactcaca 256
Query: 297 taaaaacctaggctagctggcatgggtcagagctgggagagtggagattgatggg 351
||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 taaaaacctgggctagctggcatgggtcagagctgggagagtggagattgatggg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
