BAC Information

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BAC

Clone NameMSMg01-444H09
Chromosome6 (Build37)
Map Location 118,915,705 - 118,915,945
singlet/doubletsinglet
Overlap geneCacna1c
Upstream geneLOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26
Downstream geneDcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, Wnk1, EG406236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444H09.T7 (MSMg01no444_h09.b1)MSMg01-444H09.TJ (MSMg01no444_h09.g1)
ACCAG533622AG533623
length756744
length of high quality
(start - end)
249 (72 - 320)241 (77 - 317)
definitionCHROMAT_FILE: MSMg01no444_h09.b1 PHD_FILE: MSMg01no444_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:22 2005CHROMAT_FILE: MSMg01no444_h09.g1 PHD_FILE: MSMg01no444_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAGATCCGCGGA
ATTCACTCATAGATCTCCATGTTCTTTTACACAATCTTCACAATGATCTT
TGAACCCTAAGGGATCCTAAATCTTGGCTCTGTCTCCCAGTTGTGTAACC
TTGGGAGGTCTCTGGAAACTCTGGCCATTGGCTTCTTCAGTATAACACAG
AGCTATTAATAACACCAACCTCATGAGCTACTGAGAGAGCTAAGAGGTTT
GAAGTGTTTAGAATATAAAGTGCCCATTACAAAGATAGGTCTCCATACAT
ATTTAGCTATTGATTATTGCTCTTTTTCATAGTAAGATTTATATCCTGGA
CAAGAGGGCAATATGGCTTTCAGAACAAAATTAGCAGTTTACTGTATAGT
ATTTGATATATACAAAGGTAATGAGTGGAGGCATTGCTCCTCATTCTTTG
CTTACTGTTGGTTGTGATTCTCAATGATTGTCCATGCTAGGCTCTGCTAT
GTCTCTGTGGCGTCTGTAGGTACCCTGGGTCAGGTTGTACGGCACAAAAA
GTGCAAATAATGATCTTCTTGAATCGGCTGCTGCAAGACTCTGGCATTTT
CATGTACGGCGGTGAGTGGATAAGGCCGTATTTTCTCCCCGCCTACCCCC
TTTTTTTTTCTCTTTTTTTTTCCGCGTCACCCCCCTATTCTCCCACTTTA
CGTCTTCACCTTGGACCCGCCTTTTATTTCACCCCCTTTTTTCTTTTCCC
CTCCCN
NCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCTTAGACATCCTCATGTGGA
CACATTATCCCGGACACCCTGGCTCCTGGAGGCAGGCAGGATGTCCCTGG
CATTGCACAACTCTAGGTTCTAAATAGTGTGTGCCTGCTGAGTTGTTCAA
CGTTTCTATGTATGCCCAGCCAAAGCTCTCAGGCTCATGACAGTGCATAC
TGCAGCATCCAGTCGGTTGAAAGCAACGCCTCTTTTAAAAGGGGGTACCA
CAGTTAGTTTCCATTTCTCTTCTTTCCTCTCTCTGCTCCACTTCTGCACA
CATTTTTGTGAATTCTCAGCCCAGGCACAGCCCACAGAGGCACCTCCTAT
CAGAATCACCTTCAGGTGTAGAAAGGACCTGTCACAATTTTCAAAAAAAT
AACACTTTTTTTTCCCATTCTTTAAAATGTGTATGGGTGCTTTGCCTGTA
TGTGTGCTTATGTATCGTGTGTGTGCTTTGTGCCTATGGAAGGCATAAGA
GGGGCTGTGTGCCCCAGAACTCGGTTACAAATGATTGTGAACCTCTATGC
AGTAACTGGAATCACACTCTGGTTGCACATTTTGTAACCACAGACTCTTT
TTTTTGTCCTCCTACTCCTCCAATTTATTTAATTTCACAGTTCATTGTAA
AATTTTGTTGTAACTCTCTCGACAATAAAATTTCTGTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_h09.g1 MSMg01no444_h09.g1 CHROMAT_FILE:
MSMg01no444_h09.g1 PHD_FILE: MSMg01no444_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:22 2005
         (241 letters)



>mm_chr6_118915505_118916145
          Length = 641

 Score =  420 bits (217), Expect = e-122
 Identities = 235/241 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcccttagacatcctcatgtggacacattatcccggacaccctggctcctggaggcagg 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 ttcccttagacatcctcatgtggacacattatcccagacaccctggctcctggaggcagg 260

                                                                       
Query: 61  caggatgtccctggcattgcacaactctaggttctaaatagtgtgtgcctgctgagttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggatgtccctggcattgcacaactctaggttctaaatagtgtgtgcctgctgagttgt 320

                                                                       
Query: 121 tcaacgtttctatgtatgcccagccaaagctctcaggctcatgacagtgcatactgcagc 180
           |||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 321 tcaatgtttctatgcatgcccagccaaagctctcaggctcatgacaatgcagactgcagc 380

                                                                       
Query: 181 atccagtcggttgaaagcaacgcctcttttaaaagggggtaccacagttagtttccattt 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccagtcagttgaaagcaacgcctcttttaaaagggggtaccacagttagtttccattt 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)