BAC Information

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BAC

Clone NameMSMg01-444I01
Chromosome6 (Build37)
Map Location 98,908,291 - 98,908,534
singlet/doubletsinglet
Overlap geneFoxp1
Upstream geneMitf, Gm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I01.T7 (MSMg01no444_i01.b1)MSMg01-444I01.TJ (MSMg01no444_i01.g1)
ACCAG533654AG533655
length904739
length of high quality
(start - end)
---244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no444_i01.b1 PHD_FILE: MSMg01no444_i01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:25 2005CHROMAT_FILE: MSMg01no444_i01.g1 PHD_FILE: MSMg01no444_i01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGGCGCTATACNACNCACATANGTACAGAATCCGCGGTATTCCCTGCCAT
GTTGCCAGNACCCCACCTTTCACAGTTCGTGCATGANNAAAGCTGTCCCA
GCAAGNCATGGGCGGCCCACCACTTTTACACCCCNNCTCTTTGNNAANCC
AAAACCAGGCAAATTTCCGAATTTGAGCCCAGCGTCNCCTCACATGTCTA
CCAGCCACCCANTTNNNTTTAACAAAAAAAACCTTTTTTGGAACACTNCT
CCCACAAAAAATNAAAAAAATAGGTAGGTAGTNTAGGGGGGGGGGAGGGG
GACGGGNNNNAGAATAGGTTTTTTTCCTACCTCCCCTAAAAAATCNNTAA
AGGGTGGTGGAGAGGAACCCCAACAAAAACAAAAAAAAAATTCCNNNNTC
GGGGAGTGGGGCGCGTGNNNCCCCTCCTCTTTTTTTCTTCTCCCTATTTA
ATAGAGCCCGACATNNCNATCTCCCGGTGGGGGGGGGGGGGGGGGCAGAA
CAAAAAAAANATAATAAAAATTTTCCTTTCTTTCTTTTTTCCCTCCCCCC
TCCCTTTCTTCCCCCTCCCCCCTCTCCCCCTTATTCTACCACCACNTTTT
CTTACTTTTTTTCTCCCCTTTCTTTCCCCTTTCTTCTTTTTTTTCTCCCC
TTTCATTCCCCTCTTATTCCCCCCTTTTCCCACACTTCCCTCCCCTTTTA
GTCTTTGCTTTTCCTTGCCGGTGGGTGTGGATGGGTTNCCCGCCCTTTTT
TCCATATTTTTATTTTCTTCCCTTTCCTCACTCACCCATTCTCCCCTTCA
CCTACTTTAAATTTTCTTCCTCTCCCCTTTACTCCCTTTTTTCCCCTTAC
TCCCTTCTATCACTTTATTCCCGTCTCCTATTTGTCGGGGGCGGCGGCGG
GGTG
NAACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTACCGCAAAATTCAGCACCAGGACAAACTTGT
AAAGATTTCTTGACCATCAACTACCATGTTCAGTGACCCACACCTCACTT
CACCCCAACTCAAGAATTTCCCTGCTTTTATTGTGTTCTGTCGCCATTTT
AACATTCTTCACATGTTGTTACTAAAGACTCTCTTGACATTTAAAGCAGA
CACATACTAATACTCAAGTCATAGTCTTGGAATCCTAATGCCTGCAGACT
TAGGCAGGATTTTAAATTATGAATTTTTATGTGTCTCGGGTTTTCAAAGG
AGGATGTGCAAGTGAGAAACCCAGACGCTCCCTCTCCCCTCGCCTGGCTC
CAGCCTCAAAGCCACAGCCACAGGAGGTCACCAGTAATGTTAGGCCTTTG
CTGTCCCCGACACTCTCTGAGGTTCTGTGGGGGCCGCTGCTATGTCCCGA
GCATGGCCACAAATGGGGTTAGAAAGGGCCAAAGGGGGACACATTACAGA
TAATATATTTGCTAAAGTCTAGGAAGCTGGTGTGATTACAAATAGCCCTG
CTAATGGCGGGTAATCACATGCAAAGCCCATACTGTAATTAATTTGCGTT
AGGATTAATGTCTCCCCCTGCTACTGAAACCTGAATAGTCTTCTCTCTGC
TGACATTTCCATACAGCTTACAGTTTTCAGTGTGTACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i01.g1 MSMg01no444_i01.g1 CHROMAT_FILE:
MSMg01no444_i01.g1 PHD_FILE: MSMg01no444_i01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:25 2005
         (244 letters)



>mm_chr6_98908091_98908734
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcaccaggacaaacttgtaaagatttcttgaccatcaactaccatgttcagtgaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcaccaggacaaacttgtaaagatttcttgaccatcaactaccatgttcagtgaccc 260

                                                                       
Query: 61  acacctcacttcaccccaactcaagaatttccctgcttttattgtgttctgtcgccattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacctcacttcaccccaactcaagaatttccctgcttttattgtgttctgtcgccattt 320

                                                                       
Query: 121 taacattcttcacatgttgttactaaagactctcttgacatttaaagcagacacatacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taacattcttcacatgttgttactaaagactctcttgacatttaaagcagacacatacta 380

                                                                       
Query: 181 atactcaagtcatagtcttggaatcctaatgcctgcagacttaggcaggattttaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atactcaagtcatagtcttggaatcctaatgcctgcagacttaggcaggattttaaatta 440

               
Query: 241 tgaa 244
           ||||
Sbjct: 441 tgaa 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)