BAC Information

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BAC

Clone NameMSMg01-444I12
Chromosome6 (Build37)
Map Location 14,335,254 - 14,335,472
singlet/doubletsinglet
Overlap genenone
Upstream gene1700016P04Rik, LOC100040478, Tmem168, B630005N14Rik, Gpr85, 2610001J05Rik, LOC100041043, LOC100040513
Downstream geneLOC667797, Ppp1r3a, Foxp2, LOC100040568
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I12.T7 (MSMg01no444_i12.b1)MSMg01-444I12.TJ (MSMg01no444_i12.g1)
ACCAG533676AG533677
length778732
length of high quality
(start - end)
376 (43 - 418)219 (376 - 594)
definitionCHROMAT_FILE: MSMg01no444_i12.b1 PHD_FILE: MSMg01no444_i12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:27 2005CHROMAT_FILE: MSMg01no444_i12.g1 PHD_FILE: MSMg01no444_i12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATACCCTTACACCCCTTACCCCATAAAAACCCCTAGCTTCCGAGCCT
CATGGCCAATATCCATTATCTCCTGTGTGGGATGCATGTAGGTCTGGAGC
TCTGTCATTAAACTACCTCGTGTAATTACATCAAGATGGTCTATTCGTGA
TTTTTTGGGTGCACACCAAATCTGGTTTCCCCACTAGGTTCTATCACTTT
CATTGTGTCCCATAAGTTTGGATATGTTATGGCTTCATTTTCATTAAATA
CTAAGAAGTCCTTAATTTTTTTCTTTATTTCTTCCTTGACCAAGTTATCA
TTGAATAGAGTGTTGTTCAGCTTCCATGTGAACGTTGGCTTTCTGTTATT
TATGTTGTTAATGAACATCAGTCTTAGTTCATGGTGATCTGATAGGATTG
CATTGATTATTTCAGTCTTCTTGTGTCAGTTGATTCCTGTTTTGTGGTCC
TTTGCTTGCTCAGTCTTGGAGAACGTACCATGTTTTGCTGAGTTCAACGC
ATCTTCTTTCGCCTTATGATTAAATACTTTTACCGATTCCTGCCATCTCC
CTTTGATATTCCATTCTTGTTTTCCCCCCACTGCGGCTTTCTTTCCTTTT
CTCTGCTTACCGTACCTCTTCCTTTGTTAAACTTGTTTATTCTTCAGATC
TCCCTATTCACCACTTTTTCTCCTTCGTTATCGCCCTTACCTTGTACCCT
TTCGTACTTCATTTCCTCGTAACAACAG
NCCCGATGAAGTGGGAGGCCTGGCGGNCGCCTGTTTCCGACCTGAGGNGA
ACNANAGAAGTACCAAAAAGAGCCACACACAGAGCAAGGCATACACACAC
ATACATGGGAATACTCACACAGCAAGACAAACACAAATGCAAATAGACAC
ACACATACATAACAAATCACACAGAGAGAAAACATTCATGCATAACTATG
TGGGGGGGCAAGTCTCATTCATCTTAGAGTTCTGGGGGTTATAATAGTTT
TTTTGGTTGTCTTTATGGGTCCCCCCTTCAGCTTAAATCATTGATCCTAG
AAAAAAAGGACTCTTATCCTATAACTTTAGGNAAACAAGAATAGGCCTGA
CCATGAATTTTTCCGCCCCAATTAGCTAAGAAGCCCTGCTGGTGAGAGAC
TAAGCCTGCTTGGCCTTTGTCTCAGGTCAGACAGGTATGGAAGAAGCTAA
AAGTTTGCCATTATCATTATTTATCTGTGCTCGTTTCCCCATCTGTCTGC
TTGTAAGGGTTATGTCTAGCTCGAAATCTGTCACAAGCACAGCTAACATA
AAGAATAACCCTTCTGCTTTAGATGAAAAAAAAAAGTAATTCAGATCTAA
GTTGATGTTATTTCCTTAACATGACCAAGACATATTTGCCCTGTTCTTTT
TTTTTCTATAAGTGTATTCCCCAGCTTCACTCCAGAGACAGCCCAATAAG
CCACGTATTCGCCTGACACCCAGTGCATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i12.g1 MSMg01no444_i12.g1 CHROMAT_FILE:
MSMg01no444_i12.g1 PHD_FILE: MSMg01no444_i12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:27 2005
         (219 letters)



>mm_chr6_14335054_14335672
          Length = 619

 Score =  308 bits (159), Expect = 2e-88
 Identities = 206/223 (92%), Gaps = 8/223 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaagaagccctgctggtgagagactaagcctgcttggcctttgtctcaggtcagacagg 60
           ||||| ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 419 ctaaggagcgctgctggtgggagactaagcttgcttggcctttgtctcaggtcagacagg 360

                                                                       
Query: 61  tatggaagaagctaaaagtttgccattatcattatttatctgtgctcgtttccccatctg 120
           |||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 359 tatggaag-agccaaaagtttgccatcatcattatttatctgtgctcgtttccccatctg 301

                                                                       
Query: 121 tctg-cttgtaagggttatgtctagctcgaaat--ctgtcacaagcacagctaacataaa 177
           |||| || |||||||||||||||| |||||| |  ||  ||| |||||||||||||||||
Sbjct: 300 tctgtct-gtaagggttatgtctatctcgaagtgcct--cactagcacagctaacataaa 244

                                                      
Query: 178 gaataacccttctgctttagatgaaaaaaaaaa-gtaattcag 219
           ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 243 gaataacccttctgctttagatgaaaaaaaaaaagtaattcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 619
Length adjustment: 9
Effective length of query: 210
Effective length of database: 610
Effective search space:   128100
Effective search space used:   128100
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)