BAC Information

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BAC

Clone NameMSMg01-444I17
Chromosome6 (Build37)
Map Location 19,976,338 - 19,976,833
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC626180, Eif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444I17.T7 (MSMg01no444_i17.b1)MSMg01-444I17.TJ (MSMg01no444_i17.g1)
ACCAG533686AG533687
length1,046739
length of high quality
(start - end)
---533 (75 - 607)
definitionCHROMAT_FILE: MSMg01no444_i17.b1 PHD_FILE: MSMg01no444_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:28 2005CHROMAT_FILE: MSMg01no444_i17.g1 PHD_FILE: MSMg01no444_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTTCTACATCGGATCGGTAATATGCGAGGGGATTGTGTGCGCATGATC
AGAAGAATTGCGAGATTGTCCTCTATCATGTTGAGGACAGGCGGTGCTAC
TTTGCTGCTGCCGGATTACTTGTTCTGCTGGTGCGATTGTGTGCACACAG
ATGGCCCGCCACTAGATGACCGATGCCATATCGCTTGTCTGTCTTCCGGG
TTGATTGTGTGCTGGTTGCTTATGATAAGGACTATTGCCGTGACTGCACA
CATACATGGAGAAGCAAGAGCCATTCCAGATCGTTGCTCCGTGACCACTG
CCGTTATCTGTTTTGTTGCTAGAGCTCGATGGGTGCTCCTACTCTGCGGT
CTCGTTGCCCATGAAACCTCCTGGCCGCAAGCATAGCTCGATACTCCACT
GTATCCCTACGGGCTTTTACGACTGACGTACGACGTAGACAGCGCGTTGC
CCATTCTTAACCCGCCGTATCACCGCCGTCCCGCGCAGCCCTCCTGTAGT
TTACATAAAATTTCCCCCACCCTCCCCTTGTTTACCTTTATCCCCCATTC
CCTAGCCCGTGGCTTGCCCCACTATGCTGTTTTCATGGCTTTCACCCTCC
TGTTGTTAACCCAACAACCGCTTGAGCCCTATTTGCCCCATTCTATAATA
ATTCCTTCCCACCCGCCCACCCAACTATTTTGTTGACACCCCCTACCCTC
ATCGCACATTGGTTTTCCCAGCCACGTTCTTGTCATCTTATATTTCGCCC
ACTTCTGTTTGACGCCTTATCGCCTTTCAACTTCCACACCCTATCTTTCC
CCTCCTATTTCCACCCTTTTTTGCCACCGTGTATCGCGCCTGTTTGCTGC
CCTCTCTCACCGTTCACCTGTTTACACACCTTGTTGCGTCAACTTTTGTC
TCAAATTATATTTTCCACCCTGTTTCCCGTCAAACCCATGCCCGCTGACC
TTCTATACATGTCAACACCACCCTGCTTTCAGCCTTAATCCCCCTATCCC
TACACGCTGCTAATCACCTCTCCATTATCCCCGCCACCCCCCCCCN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATATAATAACCTTTCATTTTTGTCT
CAGTATTTTTCTAATATAGTATTATCAGCTTTACAATAGATTAATATTCC
TCCAAACATCTTAATCACTTGGCATATGTAATAGCTACATAGATGATAAT
GTAAAACAGTTCTTTCTAACTTTATATCTCTAGTTTCTCCAATATTATTC
TTTCAAAGATCACTTCTTAATGTATTTTAATAGTCTGTATGCAAAGTCAA
CTGTCTACTTTTGATATTTTAATTTGGTTTACAATATATTTGTGGTGTAT
CATATATTTATATACTAGCCAATATTTATATATAATATAATAGGGTGTTT
GTGATTTATATTCAACATGTCCTCTTATATACTCATGTCTTANATATACA
CAATGAATATCAACCATAATCAGCTGTTTATCAAGAGCTAGCTCCAGGTT
ATATCATCTCCCTTTAAAATGTCATTTACACTTTCAGTTCATATTTAGAT
TTCCAGTAGTCCAAGGGCCTCTCCTCCCATTGATGGCCAACTAGGCCATA
CTCTGCTACACATGCAACTGGAGACACAAGCTCTAGGGGGTACTGGTTAG
TTCATATTGTTCCTCCTATAGGGGTGCAGACCTCTTTAGCTCCTTTGGTG
CTTTCTCTAGCTCCTTCTCTGGATAGCCTGCGTTTCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_i17.g1 MSMg01no444_i17.g1 CHROMAT_FILE:
MSMg01no444_i17.g1 PHD_FILE: MSMg01no444_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:28 2005
         (533 letters)



>mm_chr6_19976338_19977270
          Length = 933

 Score =  922 bits (477), Expect = 0.0
 Identities = 491/496 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatataataacctttcatttttgtctcagtatttttctaatatagtattatcagctttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 tatataataacctttcatttttgtctcagtatttttctaatatagtattatcagctttac 437

                                                                       
Query: 61  aatagattaatattcctccaaacatcttaatcacttggcatatgtaatagctacatagat 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatagattaatattcttccaaacatcttaatcacttggcatatgtaatagctacatagat 377

                                                                       
Query: 121 gataatgtaaaacagttctttctaactttatatctctagtttctccaatattattctttc 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gataatgtaaaacagttccttctaactttatatctctagtttctccaatattattctttc 317

                                                                       
Query: 181 aaagatcacttcttaatgtattttaatagtctgtatgcaaagtcaactgtctacttttga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aaagatcacttcttaatgtattttaatagtctgtatgcaaagtcaactgtctacttttga 257

                                                                       
Query: 241 tattttaatttggtttacaatatatttgtggtgtatcatatatttatatactagccaata 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tattttaatgtggtttacaatatatttgtggtgtatcatatatttatatactagccaata 197

                                                                       
Query: 301 tttatatataatataatagggtgtttgtgatttatattcaacatgtcctcttatatactc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tttatatataatataatagggtgtttgtgatttatattcaacatgtcctcttatatactc 137

                                                                       
Query: 361 atgtcttanatatacacaatgaatatcaaccataatcagctgtttatcaagagctagctc 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 atgtcttaaatatacacaatgaatatcaaccataatcagctgtttatcaagagctagctc 77

                                                                       
Query: 421 caggttatatcatctccctttaaaatgtcatttacactttcagttcatatttagatttcc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 76  caggttatatcatctccctttaaaatgtcatttacactttcagttcatatttagatttct 17

                           
Query: 481 agtagtccaagggcct 496
           ||||||||||||||||
Sbjct: 16  agtagtccaagggcct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)