BAC Information

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BAC

Clone NameMSMg01-444M08
Chromosome6 (Build37)
Map Location 115,049,602 - 115,049,841
singlet/doubletsinglet
Overlap geneLOC100043420
Upstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik
Downstream geneSyn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444M08.T7 (MSMg01no444_m08.b1)MSMg01-444M08.TJ (MSMg01no444_m08.g1)
ACCAG533859AG533860
length806732
length of high quality
(start - end)
272 (44 - 315)240 (74 - 313)
definitionCHROMAT_FILE: MSMg01no444_m08.b1 PHD_FILE: MSMg01no444_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:46 2005CHROMAT_FILE: MSMg01no444_m08.g1 PHD_FILE: MSMg01no444_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGGATCCGCGGAATTC
TATAAAAATTTCACCAAAGACCTGAAATCAATACTTGCAAAACTCACAAA
AATGGGAAGGAAAGGGTTGTTAAAATTTTTCTCTATTATACAAAACTAGA
TAGCCATACCAGGTAAGAACACAAAAAAGGGAAAACTTTAGACCTATTTC
ACTGATAGATATTAGATGAAAAAATTCTCAATAAAATACTAAACTAAATT
CTAGAATACATTAAGAGGGGCTGGCAAGATGGCTTAGCTGACAAAAGTGC
CTGCCATGAAGACTAATGTCTTGATTTTGAGTCTCAGGTCCCATATGGAC
ATAGCCATCTTCTACTACTTGTTCTCTGACTTCTGTGCCTACTCTGTTGG
TTGTACTCCCATACCTATATTCTGTTTGTTTCCCTGTACCCTTTTGTTTC
CCCCTCCGTTTTCTTTTCCCTTTTCTTGTTTTCCTCTCGTCATTCCCCTG
TCCTATCTTTTCTCCCTTTCTCAATGGCTAATCCCGTGTCTTCTTGCTCT
ATTCTCCCCCTCTTTTTTTCTCCATCTTTCTTCCTGTCTTTATCCGCCCC
CCCCCCCTCTCCCTTCTCTCAATCGTCTCCCCCTTTCCCCCCCCCCTCCC
CCTCTCTAACCTGTTTTACTTCCTCCTACTTTCCCCATACAATTTTGAGC
CTTTTTACTTCCTCCCTCGTATCATTATCTCCACACATTTGTGTCCATTC
CGTGCCGCCACTTTGTCCTCTGCCCCTTTCCTCTCCCTTTTTCTTCTCGC
CATCCN
NCCCCGATGATGTGGGTGGCCTGGCGGCCGCCTGGTGCAAACATGGAGGT
GAACTATAGAATTTCAGCGAAATTCTGACTCATGGGTCCGGGGAGGGCCT
GAGATTGTGCATTTCTAACAAGTTCTCATGTGATACCAACACTGCTGGTT
CTTGTTTTTAGGTCAGGGAAGAGAACTTGACCCAAGTCTAGTGGCCATAT
GTTGGAGAGATTCCAGGTCCCAGAGATAACAAGAAGGAAGAAAGACGATA
TGAGGTGACAATTCTGAAGTGTGGAGAGGTGAAAAACACCCTGTTGGTGT
CTCGCTTTGGGTAATGTTTTATGAGNTTGGGCATTTCTTTTCCCTTTTGT
TGATCTCTATTTTTATAACCCATTTACTGGTCCATTAAAGAAAGGAGACA
CAAAAGAAATCAGTGGTTTTGTAAGACACTCAAGCAACCAGGGACGCCTT
AAAATATGATAGACATTTTAACTTTTGATGGACAAAAGATACCACTGATA
TATATATACAATTAGGATTCCATTATGTGTATGTGTGTCTTCATGCATAA
CTATATTTTTAATTTATTCATCCCTTACTCCACTACTTTCCTTAGCCACT
TGCTCCCCTCTCTTTGTCCCCCTTACTTACTCTCCAAATTTTGCCCTCCC
TCCTTAAGCTTTTCTCCCTCCCCCAACCAAATCTTTCAGGCGCCCCCCCT
TTGCTCATTAACTCCTTTCACTTGATTAGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_m08.g1 MSMg01no444_m08.g1 CHROMAT_FILE:
MSMg01no444_m08.g1 PHD_FILE: MSMg01no444_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:46 2005
         (240 letters)



>mm_chr6_115049402_115050041
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 236/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgactcatgggtccggggagggcctgagattgtgcatttctaacaagttctcatgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgactcatgggtccggggagggcctgagattgtgcatttctaacaagttctcatgtga 260

                                                                       
Query: 61  taccaacactgctggttcttgtttttaggtcagggaagagaacttgacccaagtctagtg 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 taccaacactgctggttcttgtttttaggtcagggaagagaacttgactcaagtctagtg 320

                                                                       
Query: 121 gccatatgttggagagattccaggtcccagagataacaagaaggaagaaagacgatatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gccatatgttggagagattccaggtcccagagataacaagaaggaagaaagacgagatga 380

                                                                       
Query: 181 ggtgacaattctgaagtgtggagaggtgaaaaacaccctgttggtgtctcgctttgggta 240
           ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtgacaattctgaagtgtagaaaggtgaaaaacaccctgttggtgtctcgctttgggta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)