BAC Information

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BAC

Clone NameMSMg01-444N14
Chromosome6 (Build37)
Map Location 5,330,571 - 5,330,954
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018, Ppp1r9a, Pon1, Pon3, Pon2
Downstream geneAsb4, Pdk4, Dync1i1, Slc25a13, EG667462, EG667468, LOC667471
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444N14.T7 (MSMg01no444_n14.b1)MSMg01-444N14.TJ (MSMg01no444_n14.g1)
ACCAG533919AG533920
length770742
length of high quality
(start - end)
382 (48 - 429)564 (79 - 642)
definitionCHROMAT_FILE: MSMg01no444_n14.b1 PHD_FILE: MSMg01no444_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:52 2005CHROMAT_FILE: MSMg01no444_n14.g1 PHD_FILE: MSMg01no444_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCG
GAATTCCCTATGGATATTCAAGAAGTTGATTATTCTATTTATTTTTTTTT
AAGAGGGTGGGGGAAGCTCCAGATTACAAAGGCGTTCACAATAGCATCTG
TATTCTATAGGCTCTTTCAGGTTGCCAGAGCAAGGAAGCCCAATCGTGCT
TCCCTCATTAATGGGGGCTTATTGTGAGCACAAACAGGACAGCCAGCTCT
GCAGCTGCACAGCCAGCCAGGCCGCACCAGGAACTCATCAGTGCCTGTTA
TTGTCCCGGATAAACCTGTAGTTTTTGATCCAGGCAGCTGCTCTCCTGAC
TTAACCGCTTGCCCTCTCTCCGTGCCTCCCACCCTTCACCTTTAAAACGG
AGATCATAATATGTACCTCATTGAGCCGTTGTGAGGATTAACTAAGTTGA
CATGTGCAAAGTCCTTTTACAAGAGCGTCTGTGGCACAGTAAATGTTGGA
ATATGTTATCCCCCCTATTAATTCTGTGTAGCCAGTCAGCTTGCTTTGAA
CCATGAAAGCTCTGACCCCTCCGACTGATTACGATAGCGGCTACCTTCCC
TCTTTTCTCGTTTTTCTCCACACTTCCTCCCCCATTTTGCTTTTTCACCC
TTTTTTTTTTATTTTTTCTTTTCCTCCCTTTCATCCCCCTTTTTCCTCCC
CTCTCACAACTTTCTCTCCTATATATCCCTTTAATTTTTATTTTTCACCT
CCCTACTCCTCATTTACTAT
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGG
CAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATG
CAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAG
GAACACTCCTCCCTTGTTGGTGGGATTGCAAGCTTGTAAAACCACTCCGG
AAATCAGCCTGGCAATTCCTCTTAAAATTGGACATAGTCCTACCGGAGGA
TCCCACAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTA
ATAAGGACACATGCACCACTATGTACATAGCAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAA
AATATGGTACATTTACACAATGGACTACTACTCAGCTATTAAAAAGAACG
AATTTATGAAATTCCTAGGCAAATGGATGGACCTGAAGGGCATCATCCTT
AGTGAGGTAACACAATCACAAAGGAACTCAAATGATATGTACTCACTGAT
AAGTGGATATTAGCCAAGAAACTTATGATACCCCAGATATAAGATACCAT
TTGCTAAACGCATGAAACTCAAGAAGAACAAGACCAAAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_n14.b1 MSMg01no444_n14.b1 CHROMAT_FILE:
MSMg01no444_n14.b1 PHD_FILE: MSMg01no444_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:52 2005
         (382 letters)



>mm_chr6_5330435_5331218
          Length = 784

 Score =  663 bits (343), Expect = 0.0
 Identities = 373/385 (96%), Gaps = 7/385 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattccctatggat--attcaagaagttgattattctatttatttttttttaagagggt 61
           |||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattccctatggatacatt-aagaagttgattattctatttatttttttttaagagggt 462

                                                                       
Query: 62  gggggaagctccagattacaaaggcgttcacaatagcatctgtattctataggctctttc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gggggaagctccagattacaaaggcgttcacaatagcatctgtattctataggctctttc 402

                                                                       
Query: 122 aggttgccagagcaaggaagcccaatcgtgcttccctcattaatgggggcttattgtgag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aggttgccagagcaaggaagcccaatcgtgcttccctcattaatgggggcttattgtgag 342

                                                                       
Query: 182 cacaaacaggacagccagctctgcagctgcacagccagccaggccgcaccaggaactcat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cacaaacaggacagccagctctgcagctgcacagccagccaggccgcaccaggaactcat 282

                                                                       
Query: 242 cagtgcctgttattgtcccggataaacctgtagtttttg-atccaggcagctgctctcct 300
           ||||||||||||||||||||||||||||||||| |   | | ||||||||||||||||||
Sbjct: 281 cagtgcctgttattgtcccggataaacctgtagctcccgcagccaggcagctgctctcct 222

                                                                       
Query: 301 gacttaaccgcttgccctctctccgtgcctcccacccttcacctttaaaacggagatc-- 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 221 gacttaaccgcttgccctctctccgtgcctcccacccttcacctttaaaacggagatcat 162

                                    
Query: 359 -ataatatgtacctcattgagccgt 382
            ||||||||||||||||||||||||
Sbjct: 161 aataatatgtacctcattgagccgt 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 784
Length adjustment: 9
Effective length of query: 373
Effective length of database: 775
Effective search space:   289075
Effective search space used:   289075
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)