BAC Information

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BAC

Clone NameMSMg01-444O22
Chromosome6 (Build37)
Map Location 95,207,335 - 95,207,616
singlet/doubletsinglet
Overlap genenone
Upstream geneMagi1, LOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneSuclg2, LOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444O22.T7 (MSMg01no444_o22.b1)MSMg01-444O22.TJ (MSMg01no444_o22.g1)
ACCAG533982AG533983
length775763
length of high quality
(start - end)
475 (49 - 523)305 (326 - 630)
definitionCHROMAT_FILE: MSMg01no444_o22.b1 PHD_FILE: MSMg01no444_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:58 2005CHROMAT_FILE: MSMg01no444_o22.g1 PHD_FILE: MSMg01no444_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCCTTAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGGCACC
GCGGAANTCAAGGCCCTTACCTAAACATGATAAAAGCAATCTACAGCAAA
CCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACT
AAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACA
TAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAG
GGGATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGA
TATGATAGTATATATAAGTGACCCTAAAAATTCTACCAGAGAACTCCTAA
ACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATAAACTCAAAC
AAGTCAATGGCCTTTCTCTATACAAAGAATAAACAGGCTGAGAAAGAAAT
TAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTTG
GTGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAAAATTTCAAA
TCTCTGAAGAAAGATATTAAAGAAGATCTCCGAAGGATGGAAAGATCTCC
CCATGCTCATGGGATTGGCAGGACCAACCTTTGGAAAAATGGGTAATCTT
GGCCAAAGCAACCCTAAAAATCCATGGGAGTCCCCCCTCCTAAATTCCAA
CTCCCATTTTTCCACTGATTTCCAAAAGGAGAAACTTTCACATTTCCCCT
GTGGAGCACATAAACCACCCAGGAG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATGCACCCTTGTCTATCTTCCCAGTCC
AGTGGCTCACCAAGTTAAGATAGCCAACAGCAGTGTCCTCTGAACAGAAA
GTCATACAACCCTGTGTGTTTTTATTAAAGAATCAGCAGAGACATACACA
TGCCATTACCACTTCTTCAGCGGAACAGGACATCAGCAGAGACGTTTGCT
CACGATAAGGAAAAGGGAAAGATTGTGGGCAGAACGAAATCTCGACATTT
TCCTTGCCAACAATTTATTTTTTGTAAAACTATTACTTGGAGAGGGAAAG
TTTTATATTTAATAGGTAAATCAGAGCCAACCCAGGTGGTGTGTGACAGG
AGACATTTAATTTCCCCCTCAGTGGGACATCACATTCAATAGGTTGTGGC
TTAGCTATGCCTTACCTGCTGCCTTCTGCAAGAAAGTGGTGTGAACTCGA
AATTGATTGCATTAGTATCCAGAGCTCTGGCTTTGCTGGCCTGCGTTTGT
TTTTCTCTTCCTATTTATTTACTTTATTTATTTATTTATTTATTTATTTA
TTTATTTATTTATTTATTTATTTATTTATTTAATTCATNCCTAAAACCTT
TTGTTTTTTTTGTCTTCCCTCCTAACGGCGCGCCTTATTACGTCCTGCCC
CTTTGCCCTTTTCTCCCCCTACCACCCATTCCTTATTTTTTCTTTCGTCT
TACCTTTTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_o22.g1 MSMg01no444_o22.g1 CHROMAT_FILE:
MSMg01no444_o22.g1 PHD_FILE: MSMg01no444_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:59 2005
         (305 letters)



>mm_chr6_95207135_95207839
          Length = 705

 Score =  545 bits (282), Expect = e-159
 Identities = 282/282 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaactattacttggagagggaaagttttatatttaataggtaaatcagagccaacccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaactattacttggagagggaaagttttatatttaataggtaaatcagagccaacccag 260

                                                                       
Query: 61  gtggtgtgtgacaggagacatttaatttccccctcagtgggacatcacattcaataggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggtgtgtgacaggagacatttaatttccccctcagtgggacatcacattcaataggtt 320

                                                                       
Query: 121 gtggcttagctatgccttacctgctgccttctgcaagaaagtggtgtgaactcgaaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggcttagctatgccttacctgctgccttctgcaagaaagtggtgtgaactcgaaattg 380

                                                                       
Query: 181 attgcattagtatccagagctctggctttgctggcctgcgtttgtttttctcttcctatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgcattagtatccagagctctggctttgctggcctgcgtttgtttttctcttcctatt 440

                                                     
Query: 241 tatttactttatttatttatttatttatttatttatttattt 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatttactttatttatttatttatttatttatttatttattt 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)