BAC Information

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BAC

Clone NameMSMg01-445E06
Chromosome6 (Build37)
Map Location 97,408,162 - 97,408,447
singlet/doubletsinglet
Overlap geneFrmd4b
Upstream geneC630007B19Rik, C130034I18Rik, A130022J15Rik, Tmf1, Ube1c, Arl6ip5, Lmod3
Downstream geneLOC641241, LOC100043692, Mitf, Gm765, LOC666019
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445E06.T7 (MSMg01no445_e06.b1)MSMg01-445E06.TJ (MSMg01no445_e06.g1)
ACCAG534237AG534238
length737777
length of high quality
(start - end)
240 (70 - 309)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no445_e06.b1 PHD_FILE: MSMg01no445_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:24 2005CHROMAT_FILE: MSMg01no445_e06.g1 PHD_FILE: MSMg01no445_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGAATTCAA
GGATTGACTACCTGCAGGAACACAAGACCAAGTACATTCAAATAAAAGTT
AGTTAATTTTGTTTTCAGATGCTATTTTATTTATTTATTTATTTATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTTTCCAAGAGCTGAGGA
CCGAACCCAGGGCCTTGTGCTTGCTAGGCAAGCAGCGCTCTACCACTGAG
CTAAATCCCCAACCCACAGATTCGATATTTTAAAAGATGATTGTTAAAAC
ATATTTGGTATTTATTCTGATTTTTAGATCCCTGTAGCAAAGCCTTTGTT
CCATGTGTATTTGAACGGGAGTGTTTCTACTCCACGGAGCTCTGTTAGAA
AATAGCTTCCTGCCAAGCTCTGGTGGGACAGGCCTTTCATTCCAGCCCTG
GGAGGCAGAGGCAGGTGGATCTCTGTGAATTTGAGGCCAGACTTGTCTAC
TGAGTGAGTTCCAGGACAGCCAGCGCTACTGAGAGACACCCTTGTCTCAC
AAGGAAAACATTCCTTCGACCCTTCCTAGAGGATCCATTGCTCTTGCCGA
ACCGCATGAGGCTGCCTCTCCTGAGGCCCTGCGACTGTGTTTTTGTTTCC
GCGCGAAGGAGACTATTCCGGTTAACCCCGCCGGGTGTTTGTGTAACCTG
GGCTCCGCCCCCCGCCGCCGCGGGGCCCCACCTTTCG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATCAGCTCACAGAAGAGACCTCGGAAATGCC
ATTTTTGTGGATAGCTATCAATTAATTAATGTACTCTTCGGATTTGTCAG
AGGAAGTCTTACATCCTTATTAAAGGGAAGCTTTTGGTTCTTTCCCCCTT
GTAATGTGGTTATGGTAAACTCATTAAAGGCCAATACCGTGTGCTCAGCC
TCTCTTCCTTAGTCAGTTGTTGGCAATGGGGGGAGGGAGGGAAATCTGGG
TAGACTTCATATTTGAAAGGAAATTATCTAATGCAGTGGAGTGCAAAGCT
GGGGGGAGGGGGCGGAGAGGGAGGTATAGAGTTTTTTTTTTTTTTTTTGT
TGGTGTGAGAATNATGCCTGGCGCGCTATATTACAATGTTATATTCTTTA
TTTATTTTTGTCTCGTTGTATAGGGCGTCGTTTTTGCTTGTGCGCGACGC
TTTCGTATACTTTTTCCCTGATTTCTTTCCACCGTGTTTGTGTCTCTTGC
CGGTTTAAGTGGTGTCCGCATCCGTTGTTCTTGTTTACTTAGGTATGTAA
TAGTACTTCATACAGTGATTCAACCGTTATTCTCCCCACATGTGTTTTTC
ATTGCGTCATTTTTTTCTCTTTGTTCGGGGGTTGTAGATAGAGGTGTTCC
CGGTATAACTACCTTTAACTCTCATTTCTCTTCATTCTTTTTCGTGTGCT
GTACGAACTTTTTATTCACACTTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_e06.g1 MSMg01no445_e06.g1 CHROMAT_FILE:
MSMg01no445_e06.g1 PHD_FILE: MSMg01no445_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:24 2005
         (286 letters)



>mm_chr6_97407962_97408647
          Length = 686

 Score =  491 bits (254), Expect = e-143
 Identities = 278/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcagctcacagaagagacctcggaaatgccatttttgtggatagctatcaattaattaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 486 atcagctcacagaagagacctcggagatgccatttttgtggatagctatcaattaattaa 427

                                                                       
Query: 61  tgtactcttcggatttgtcagaggaagtcttacatccttattaaagggaagcttttggtt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgtactcttcagatttgtcagaggaagtcttacatccttattaaagggaagcttttggtt 367

                                                                       
Query: 121 ctttcccccttgtaatgtggttatggtaaactcattaaaggccaataccgtgtgctcagc 180
           ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ctttcccccttataacgtggttatggtaaactcattaaaggccaataccgtgtgctcagc 307

                                                                       
Query: 181 ctctcttccttagtcagttgttggcaatggggggagggagggaaatctgggtagacttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctctcttccttagtcagttgttggcaatggggggagggagggaaatctgggtagacttca 247

                                                         
Query: 241 tatttgaaaggaaattatctaatgcagtggagtgcaaagctggggg 286
            |   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 gaaaagaaaggaaattatctaatgcagtggagtgcaaagctggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)