BAC Information

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BAC

Clone NameMSMg01-446B02
Chromosome6 (Build37)
Map Location 140,508,488 - 140,541,808
singlet/doubletdoublet
Overlap genePlekha5
Upstream geneLOC100043898, Pik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810
Downstream geneAebp2, EG664868, LOC664875, Pde3a, Slco1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446B02.T7 (MSMg01no446_b02.b1)MSMg01-446B02.TJ (MSMg01no446_b02.g1)
ACCAG534850AG534851
length715728
length of high quality
(start - end)		462 (43 - 504)504 (87 - 590)
definitionCHROMAT_FILE: MSMg01no446_b02.b1 PHD_FILE: MSMg01no446_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:29 2005CHROMAT_FILE: MSMg01no446_b02.g1 PHD_FILE: MSMg01no446_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,508,488 - 140,508,945)(140,541,305 - 140,541,808)
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCATATGTGTTTATATTGTATTTTAATCATGTCCACTCCCCCAGGTTCC
CTACAACACTCCTCCCTCCCAGTTTCATGCCCCCTTTCCCATAATGCATT
GGGTCCCATCAGTGCTGCCTGTTCATCTCGTTTGTTTCTTTCCACGTTTC
CTTTGTGACGTCCCTGTTAGTGATGAAGAGCAAGGAAGAGGGTCAGTGAA
TTCCGCAGTGACCTCAGCGATGCTCCAGCCTCTGTCTGCTGAGTTATGGG
ATTTAGAGGCGTGCCCCGCCATTGCCCAAACTAGTCTTAGGGCCTAGAAA
GTTGATATCTTCTTGTACCTTGCTGCAAAGAATAAATAATCTTGTACCAA
TCTTTTTCACTCCTTTAGTCTCATATAGCCAAGCAAACTTTGATTCTCCC
ACAATCTGGTTTTTTGCTGTTTTATAGGGGGGTTCTGTGTGTGTGTGTGT
GTGTNGTGTTTTNNNTTNTTNNTTTTTTTTTTTTTTTTNTCTTTCTTTTT
TTTTTTTTTTTTTTTTCTCCTTTCTTTTTCTCCCTCCCTCTTTCCCTTTT
TTCTTTCTTCCTTTTTTTCCCTTCCCTCTCCCCTTTTTTTTTTTCCCTCC
TTTTTCTCCTCCTCCCCCCTTTCNTCTTTCTTCTTTCTTTTCCCCCCCCC
CCCTCCTTCCTCCTN

GCCGAATNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAACCACCTTGT
CTCGAAAAAACCCAAAGTGGAAAAAAGGAAAAAGGAAAAGAAAGAACAGT
TAAAACGGGGCTTGTACCATCTGGCCTAGCCTTCCTTTTCTTGCTTTAAA
GTCAGTTCCCAGGTATTTGTCAGAAAGTACTGTTGTATCTTTTCTAGTTC
ACACCATGGAGGTGTCAGTGTTACAGGCTTAGCACCACAGCACACCAACC
CAGAGTGGCTCTAATGGTTCCAGAGCGGGAATCCCTGTGCTACTCTTTGG
TATCAGGCCAGCGTGACATCGAGTTTAGAGGACTGAAATGGTTTTGCTTA
CAGAGTACAGGAGGCAAATGTGTAAGAGGCCCGGGGCTTGGGAGGCAGGG
CTAGGAGTGAAGAACAGAAGGCCAAGGTCCACCCCACCCTTATACCCGAG
AGAGAAAGACAGACCAGCACAACCACTTGCTTGCTAATGTGCCGTGGACA
TCGTGGGACTCCCATACTGAGGTCTCAGTGTGCACTAGGGTACCTGCCAG
AGTAAACACAATTCCACAGCTCCCAAAGTATCAGGTGTGCTTTCTAACGA
TCCTGGGCTGTAGGATTTCCATGTAGGAAGAAATGTTTAAAAAAGATCTT
GTTTTAAATTATGTCCTACGGCATGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_b02.b1 MSMg01no446_b02.b1 CHROMAT_FILE:
MSMg01no446_b02.b1 PHD_FILE: MSMg01no446_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:29 2005
         (462 letters)



>mm_chr6_140508284_140509145
          Length = 862

 Score =  886 bits (458), Expect = 0.0
 Identities = 458/458 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatatgtgtttatattgtattttaatcatgtccactcccccaggttccctacaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccatatgtgtttatattgtattttaatcatgtccactcccccaggttccctacaa 264

                                                                       
Query: 65  cactcctccctcccagtttcatgccccctttcccataatgcattgggtcccatcagtgct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cactcctccctcccagtttcatgccccctttcccataatgcattgggtcccatcagtgct 324

                                                                       
Query: 125 gcctgttcatctcgtttgtttctttccacgtttcctttgtgacgtccctgttagtgatga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcctgttcatctcgtttgtttctttccacgtttcctttgtgacgtccctgttagtgatga 384

                                                                       
Query: 185 agagcaaggaagagggtcagtgaattccgcagtgacctcagcgatgctccagcctctgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagcaaggaagagggtcagtgaattccgcagtgacctcagcgatgctccagcctctgtc 444

                                                                       
Query: 245 tgctgagttatgggatttagaggcgtgccccgccattgcccaaactagtcttagggccta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgctgagttatgggatttagaggcgtgccccgccattgcccaaactagtcttagggccta 504

                                                                       
Query: 305 gaaagttgatatcttcttgtaccttgctgcaaagaataaataatcttgtaccaatctttt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gaaagttgatatcttcttgtaccttgctgcaaagaataaataatcttgtaccaatctttt 564

                                                                       
Query: 365 tcactcctttagtctcatatagccaagcaaactttgattctcccacaatctggttttttg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcactcctttagtctcatatagccaagcaaactttgattctcccacaatctggttttttg 624

                                                 
Query: 425 ctgttttataggggggttctgtgtgtgtgtgtgtgtgt 462
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgttttataggggggttctgtgtgtgtgtgtgtgtgt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no446_b02.g1 MSMg01no446_b02.g1 CHROMAT_FILE:
MSMg01no446_b02.g1 PHD_FILE: MSMg01no446_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:29 2005
         (504 letters)



>mm_chr6_140541105_140542008
          Length = 904

 Score =  975 bits (504), Expect = 0.0
 Identities = 504/504 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaccaccttgtctcgaaaaaacccaaagtggaaaaaaggaaaaaggaaaagaaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 cagaaccaccttgtctcgaaaaaacccaaagtggaaaaaaggaaaaaggaaaagaaagaa 645

                                                                       
Query: 61  cagttaaaacggggcttgtaccatctggcctagccttccttttcttgctttaaagtcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 cagttaaaacggggcttgtaccatctggcctagccttccttttcttgctttaaagtcagt 585

                                                                       
Query: 121 tcccaggtatttgtcagaaagtactgttgtatcttttctagttcacaccatggaggtgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 tcccaggtatttgtcagaaagtactgttgtatcttttctagttcacaccatggaggtgtc 525

                                                                       
Query: 181 agtgttacaggcttagcaccacagcacaccaacccagagtggctctaatggttccagagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 agtgttacaggcttagcaccacagcacaccaacccagagtggctctaatggttccagagc 465

                                                                       
Query: 241 gggaatccctgtgctactctttggtatcaggccagcgtgacatcgagtttagaggactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gggaatccctgtgctactctttggtatcaggccagcgtgacatcgagtttagaggactga 405

                                                                       
Query: 301 aatggttttgcttacagagtacaggaggcaaatgtgtaagaggcccggggcttgggaggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aatggttttgcttacagagtacaggaggcaaatgtgtaagaggcccggggcttgggaggc 345

                                                                       
Query: 361 agggctaggagtgaagaacagaaggccaaggtccaccccacccttatacccgagagagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 agggctaggagtgaagaacagaaggccaaggtccaccccacccttatacccgagagagaa 285

                                                                       
Query: 421 agacagaccagcacaaccacttgcttgctaatgtgccgtggacatcgtgggactcccata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 agacagaccagcacaaccacttgcttgctaatgtgccgtggacatcgtgggactcccata 225

                                   
Query: 481 ctgaggtctcagtgtgcactaggg 504
           ||||||||||||||||||||||||
Sbjct: 224 ctgaggtctcagtgtgcactaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 904
Length adjustment: 10
Effective length of query: 494
Effective length of database: 894
Effective search space:   441636
Effective search space used:   441636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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