BAC Information

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BAC

Clone NameMSMg01-446L10
Chromosome6 (Build37)
Map Location 11,443,677 - 11,443,914
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347, LOC435879, Thsd7a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446L10.T7 (MSMg01no446_l10.b1)MSMg01-446L10.TJ (MSMg01no446_l10.g1)
ACCAG535343AG535344
length747773
length of high quality
(start - end)
246 (64 - 309)238 (86 - 323)
definitionCHROMAT_FILE: MSMg01no446_l10.b1 PHD_FILE: MSMg01no446_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:19 2005CHROMAT_FILE: MSMg01no446_l10.g1 PHD_FILE: MSMg01no446_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATGCGCGGAATTCTTAAC
CATTACGAACTTCTGGGAGAATCACCATTGCTGACCTAAAGCTGTACTGC
AGAGGAATATTGAAAAACAAATCAAAACAGAACAAAACAAGCAAACAAAC
GAACAAACAAAAAAACGCATGGTATTGGTACAGAGACAGAGAGGTCCATC
AATGGAATAGAATTGAAGACCCAGAAACGTATCCACACCCCTATGGACAC
TTGATTTTTGACAAGCCAGAAAAATGTAGTGGAAAAAAGAAAGCATCTTC
AACAAATGGTTGTTTTTCTAACTGGAGGTCTGTGTGTAGAATGCAAATTG
GTCCAGATATATGTCCTGTACAAGGCTCAAATCCAGGTGAATCAAAGACA
TCTACATAAAACCACATATACTGAAACTTATAGAAGAGGAAGTGGGAAGT
AGCCTCAAAAAGTTTTGTTGATTGCATCTTTCTGAAGATTTGTTTTATTC
TCTTCATTTTTCATGTTTTGCTTTGTTTTAAGAAACATTGTCATGTACAC
ATCACATAGCTCTGCTTGGCTTTAATAGCACTGTCCATACAGACCTGTGC
CACCGCATCCAGCTCATGTGTGTTGACCTACCTACACATCGCCCCCCCTT
ATGTTTTATTAGTCATTCCAACGCTGACCCAAACACCCAACCCATTTTTC
TGTATGTCTGTTTCTTAAATCATCATCTACTCCTCAAATTCGCCCTC
GCCTAATTNCTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTTTCAAGAATGT
CCCTTTTTGTTAAAATTTAGTTACTTATGCATTGTCATTTTTTCATATCA
AACTCTGACATTTAAATATACTTAAAGGAGTCTGGCAGACTGCCCCCACA
GTGGCCTAGATGAGATGCCTGAAATAGGCACTTCATAAACCAATCACTTC
TAGACTTTTCAGGTCATCAATACTCATTTTCTCATATAGAAAAACAAACA
AACCTTACCAAAGTCTTTCATAAGCAAAGGTTGTTTTTATTGTGAACAGA
TGAGGTTTGGGTAGAACAAAATCAGCATACACAGATAAACCAGCAAAGGG
GATTCAGAGGACCGTTTAGAATAATATAAGATGCCATTTCCCTATTGTTT
ACTAGATACACTGTGAAAATTATAGAATAGAAACTATGCTATGGATATTA
ACATTCCCTTTTCCATACCAGTTGAGTGACACATTGTGCTTTTCCCAAAA
ATGACTTCCCCAAATTTTGATTTTGACCGACCCTTATTTCCTACCCCCTT
TTTCGCCTTTCCCCGCTCACTTTTACTCCTACCATCACCCACTGTTCATT
AAAACTACCTCATCCTATCTTTCCCATCGAATTTTTTACTTTCGAACAGT
ACCCTACCAATTTTATCATCCCCATGCCTTTCGGCACACCTTTTTCCCTT
TATCCCTTTTTATACCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_l10.g1 MSMg01no446_l10.g1 CHROMAT_FILE:
MSMg01no446_l10.g1 PHD_FILE: MSMg01no446_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:19 2005
         (238 letters)



>mm_chr6_11443477_11444114
          Length = 638

 Score =  429 bits (222), Expect = e-125
 Identities = 234/238 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagtttcaagaatgtccctttttgttaaaatttagttacttatgcattgtcattttttca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 tagtttcaagaatgtccctttttgttaaaatttagttacttatgcattgtcattctttca 260

                                                                       
Query: 61  tatcaaactctgacatttaaatatacttaaaggagtctggcagactgcccccacagtggc 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 tatcaaactctgacatttaaatatacttaaaggagtctggcagactacccccacagtggc 320

                                                                       
Query: 121 ctagatgagatgcctgaaataggcacttcataaaccaatcacttctagacttttcaggtc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 ctagatgagatgcctgaaataggcacttcataaaccaatcacttctagacttttcaggcc 380

                                                                     
Query: 181 atcaatactcattttctcatatagaaaaacaaacaaaccttaccaaagtctttcataa 238
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 atcaatactcattttctcatatagaaaaacaaacaaaccttaccaaagcctttcataa 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)