BAC Information

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BAC

Clone NameMSMg01-447N15
Chromosome6 (Build37)
Map Location 124,249,399 - 124,249,785
singlet/doubletsinglet
Overlap genenone
Upstream geneEG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34, Vmn2r27, LOC623374, EG622297
Downstream geneCd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447N15.T7 (MSMg01no447_n15.b1)MSMg01-447N15.TJ (MSMg01no447_n15.g1)
ACCAG536206AG536207
length771779
length of high quality
(start - end)		362 (51 - 412)387 (81 - 467)
definitionCHROMAT_FILE: MSMg01no447_n15.b1 PHD_FILE: MSMg01no447_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:53 2005CHROMAT_FILE: MSMg01no447_n15.g1 PHD_FILE: MSMg01no447_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTTTGTTTAGCTCTGTACCCCATTTTAATAGGGTTATTTGG
TTTTCTGAAGTCTAATATTTGAAATCTTTGTATATTTTGAACATTAGCAT
CTATCAGATGTAGGGTTAGTAAAGATCTTTACCCAATCTGTAGGATGTCT
TTTTGTCCTATTGACGGTGTGCTTTGCCTTACAGATGTTTTTCAGTTTCA
TGAGGCCCTGTCTGTAAATAGTTGATCTTAGAGACTAAGCCATTGGTGTT
CTGTTCAGGAAATTTTCCCCTGTGTCAGTGTGTGTAAGGCTCTTTCCCAC
TTGCTCTTCCATTAGATTCAATCTATCTGTTTTGTTTGATTGTTTGTTTT
GGGGGGGGGGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTNNNNNNNNNNNNNNN
NTNNNNTNNTNNNTNTNTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTNTTTTNNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTNNTNTNNTNTTTNTTTTNTTTNNTTTTTGTTT
TTTTTTTNTTTTTTTTTTTTG

TTTTTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTATCTTGTCCTAAGCCCT
AACCTGCTCTTGCCATATTTTCAATCTTATACTGCATCCCTTAAGAGCTG
GTAACCACACTGAGAGCACACTCCTATGAGATCAATAGACCACAGATTGC
TCTACAAACACCTCAACTTCTGTTTTGATGTTCATCCAGTTTGAACATAC
AATACTCCAAGCTGCCAGGTACATTTGTGGCACATTCTAGTGACAATTAC
AGTTGATTTGTGGCTTTGATTGGCTTATGATTTAAGGGCCCACATAATAT
TAAGCTTGTTCCCCAATTGAAAATGATAGTCTAGGCCGGCATTGTAGGTG
ACATCACACTGATACCAGATGTTACTCCTGGGTGATAACAGTTCCTCAGG
CAACACTACCCCAGCCAAAGACCTTGTCCTTGAAAATGCTTCACCTTCTA
TGTCAGAGTTGACTTTACTCAGACACTAAAGCTGTCAACCATGGACAATC
TCTCCTACCATACATGTTGGGTACAAAACATCCTTTTTCACCCTTCCTTT
TGATTTTAGAATTCTACAACATTTTTGAAACCCTATTTTTTTAATTTTCC
TGGGGGCTATATCCTTATTTTGGGGGATAAAAACAAAACCTTTATGTTGC
CCGGCCGTGAAGGGGAAACCTCGTAATACTTTTTTTTTTAATTAGGGGGG
AGTATGGGTTTTTTCCCCCTGCCCTCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_n15.g1 MSMg01no447_n15.g1 CHROMAT_FILE:
MSMg01no447_n15.g1 PHD_FILE: MSMg01no447_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:53 2005
         (387 letters)



>mm_chr6_124249199_124249985
          Length = 787

 Score =  741 bits (383), Expect = 0.0
 Identities = 386/387 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctatcttgtcctaagccctaacctgctcttgccatattttcaatcttatactgcatccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tctatcttgtcctaagccctaacctgctcttgccatattttcaatcttatactgcatccc 528

                                                                       
Query: 61  ttaagagctggtaaccacactgagagcacactcctatgagatcaatagaccacagattgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ttaagagctggtaaccacactgagagcacactcctatgagatcaatagaccacagattgc 468

                                                                       
Query: 121 tctacaaacacctcaacttctgttttgatgttcatccagtttgaacatacaatactccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tctacaaacacctcaacttctgttttgatgttcatccagtttgaacatacaatactccaa 408

                                                                       
Query: 181 gctgccaggtacatttgtggcacattctagtgacaattacagttgatttgtggctttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gctgccaggtacatttgtggcacattctagtgacaattacagttgatttgtggctttgat 348

                                                                       
Query: 241 tggcttatgatttaagggcccacataatattaagcttgttccccaattgaaaatgatagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 tggcttatgatttaagggcccacataatattaagcttgttccccaattgaaaatgatagt 288

                                                                       
Query: 301 ctaggccggcattgtaggtgacatcacactgataccagatgttactcctgggtgataaca 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 287 ctaggccggcattgtaggtgacatcacactgataccagatgttattcctgggtgataaca 228

                                      
Query: 361 gttcctcaggcaacactaccccagcca 387
           |||||||||||||||||||||||||||
Sbjct: 227 gttcctcaggcaacactaccccagcca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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