BAC Information

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BAC

Clone NameMSMg01-448E16
Chromosome6 (Build37)
Map Location 85,564,542 - 85,864,540
singlet/doubletdoublet
Overlap geneAlms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1
Upstream geneExoc6b, LOC665129, Npm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4
Downstream geneTprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448E16.T7 (MSMg01no448_e16.b1)MSMg01-448E16.TJ (MSMg01no448_e16.g1)
ACCAG536541AG536542
length780769
length of high quality
(start - end)		382 (45 - 426)339 (79 - 417)
definitionCHROMAT_FILE: MSMg01no448_e16.b1 PHD_FILE: MSMg01no448_e16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:31 2005CHROMAT_FILE: MSMg01no448_e16.g1 PHD_FILE: MSMg01no448_e16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,864,186 - 85,864,540)(85,564,542 - 85,564,880)
sequence
CCTCAAAATTTGTGGCGCTATACGATTCCTATAGGTTCCGGATCCGCGGA
ATTCTCTGGCACTTTCCATGTACATCAGAACATACCATATGTAGCAGGAG
CAGCTGTGTCTTGGAGTGAGAATTTCTGAAATATGCTTTGTTCTGAAACA
GATATAGACAATAAAGGTCTGAACCAAAGTTATAAGACAGTGTCAGGTAG
CCACATATAAAACCATTTCTCTGTAACTTCTCAGCTTTCCTTTTGGAAAG
TCCACCACAGTGAGTCCAGTCTCACTCACCAGGGCTAGACTGCCCTGCAC
TTATAGCCTTTCTGTTTCATCTTCTCCAGTGCTGGAATTTCACACAAGCA
GTGTGACTTGGTTCTAATTCTGACTCCTTTCCACATCTCTGAAGATACTA
TTGTTTGGTTGTGGTGGTTTAACTTTATCTCACAAATCTGCCATGGGAAC
CTGTTCCAATTTATCCGCACTCCGCTTTTGATTGTTCTTCTCGTTTTCTC
CCTTTCTCGCCACCATCGCCTCCCCTTTTCCCCATTCTCCCTTTTCTTCT
TTTCCCCTCCTTTTACCTCCTTTTTCTCTTTCTCCCCATCCCCTCACCCG
CCCTTTTTCTCTTTCCCCCCCTCTTATTTCTTCCTTTCGCCTCCCCTCAC
TTTTTTTATCGTCGTAACCCTATTTTTTTCTTTCCCACATTCGTTTTTTA
TCTTATTTTTTTCCCTCCTTTTCTTTTTTTTCCTCACCCCCATTTTGACT
TTACTTTTTTTTTTTTCTTTTCCGCACCCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATGGCTTGAGAACATGAATC
TCATTCTGTTACTAGACTGGCCCAGGTCTTACTGGTCTTACTGGTCTCAG
TAAACGTCTTTCTTCTGAGATTTCAGTGGGGTATACCACCACACCTGGGA
GGAATAGAATCATAAGTAACTGATAAAACTCCTCAGTGTGTTGTGCTGAG
GAGATGGGTCATCAGTGAAGAGCGGTTGTTGCTCCTTTTAAAGATTTACT
TTATTTTTATGTATGTGAATGTTTTGTCTGCATGTATCTGCGCACCACAT
GCTTGTAGTAGTACCTTTGGAAACAAGAAGAGGGCATTGGATTCTCAAGG
ACTGGAATCAGACTCTTGGGAGCTGCCAAATGGGGGTTAGGAATTANACT
CAGGAAGAGTAACCAGTAATCTTACTTGCTGCGAATCTCTCCATTCCCAA
CTTGTTCTTAAAGAAAAACTGGGTTCTATTTTTAGAGGTAAATGGGGGGG
CCAAAACATCCGGAGCCCTTTTTCCGGGGGATTTACGACTTTCCTCTATT
TTGGTCCTGGGGTGACCCCTTTAATTTTGGCAAACTTCTTCTTTCTTTTG
GTTTTTTTATAGCCTCTCTTCCTCCTCTCGGTGTTTCTCTTTACAAGCTG
CTTTTTACATGTCCGTCTCTCTGCTCTCTTTTATTTTCCCTCTCTCTTAT
CTCCCGTCTTACATATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_e16.b1 MSMg01no448_e16.b1 CHROMAT_FILE:
MSMg01no448_e16.b1 PHD_FILE: MSMg01no448_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:31 2005
         (382 letters)



>mm_chr6_85863963_85864744
          Length = 782

 Score =  663 bits (343), Expect = 0.0
 Identities = 352/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 24  atgtacatcagaacataccatatgtagcaggagcagctgtgtcttggagtgagaatttct 83
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 atgtacatcagaacataccatatgtagcaggagcagctgtgtcttggagtgagaatttct 519

                                                                       
Query: 84  gaaatatgctttgttctgaaacagatatagacaataaaggtctgaaccaaagttataaga 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 518 gaaatatgctttgttctgaaacagatatagacaataaaggtctgaaccaaagttagaaga 459

                                                                       
Query: 144 cagtgtcaggtagccacatataaaaccatttctctgtaacttctcagctttccttttgga 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 cagtgtcaggtagccacatataaaaccatttctctgtaacttctcagctttccttttgga 399

                                                                       
Query: 204 aagtccaccacagtgagtccagtctcactcaccagggctagactgccctgcacttatagc 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagtccaccacagtgagtccagtctcactcaccagggctagactgccctgcacttatagc 339

                                                                       
Query: 264 ctttctgtttcatcttctccagtgctggaatttcacacaagcagtgtgacttggttctaa 323
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctttctgtttcagcttccccagtgctggaatttcacacaagcagtgtgacttggttctaa 279

                                                                  
Query: 324 ttctgactcctttccacatctctgaagatactattgtttggttgtggtggtttaa 378
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ttctgactcctttccacatctctgaagatactattgtttggttgtggtggtttaa 224


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no448_e16.g1 MSMg01no448_e16.g1 CHROMAT_FILE:
MSMg01no448_e16.g1 PHD_FILE: MSMg01no448_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:31 2005
         (339 letters)



>mm_chr6_85564342_85565080
          Length = 739

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatggcttgagaacatgaatctcattctgttactagactggcccaggtcttactggtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatggcttgagaacatgaatctcattctgttactagactggcccaggtcttactggtct 260

                                                                       
Query: 61  tactggtctcagtaaacgtctttcttctgagatttcagtggggtataccaccacacctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactggtctcagtaaacgtctttcttctgagatttcagtggggtataccaccacacctgg 320

                                                                       
Query: 121 gaggaatagaatcataagtaactgataaaactcctcagtgtgttgtgctgaggagatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggaatagaatcataagtaactgataaaactcctcagtgtgttgtgctgaggagatggg 380

                                                                       
Query: 181 tcatcagtgaagagcggttgttgctccttttaaagatttactttatttttatgtatgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatcagtgaagagcggttgttgctccttttaaagatttactttatttttatgtatgtga 440

                                                                       
Query: 241 atgttttgtctgcatgtatctgcgcaccacatgcttgtagtagtacctttggaaacaaga 300
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 atgttttgcctgcatgtatctgcgcaccacatgcttgtagtagtacctctggaaacaaga 500

                                                  
Query: 301 agagggcattggattctcaaggactggaatcagactctt 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagggcattggattctcaaggactggaatcagactctt 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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