BAC Information

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BAC

Clone NameMSMg01-448H03
Chromosome6 (Build37)
Map Location 33,517,790 - 33,518,233
singlet/doubletsinglet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448H03.T7 (MSMg01no448_h03.b1)MSMg01-448H03.TJ (MSMg01no448_h03.g1)
ACCAG536658AG536659
length773790
length of high quality
(start - end)
444 (45 - 488)237 (82 - 318)
definitionCHROMAT_FILE: MSMg01no448_h03.b1 PHD_FILE: MSMg01no448_h03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:43 2005CHROMAT_FILE: MSMg01no448_h03.g1 PHD_FILE: MSMg01no448_h03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGCATCCGCGGAATT
CCAGTTCCGATTCACGCTTTTGTGCTAGAAAATGCTTCCATTGGCTTAGT
ACTCAAAGAAACACTCGAATATTCTTACTTCCTAAGTTGGAAGGAAATTA
ATGTGAAGAAATCAACATGACAGGTGATGAAGAATAATGGCCTTACGTGA
CTGAGAGAAAAAGGACAGATAGTGAGCTCTTTCAAAAAAAAAATTTTAAG
AATCAAAATACAGTTGCATAACAGCATTGCTAAGCTTCCTGAGGAAGCTA
ATCAGAACTGGCAGCCACAGAGCATGAGCAGTACCACAGCTCACTGGAAG
CATCTGCATCACAGAGGGACAGGTGGCTTTAAAGAACAGTACCTGAAAAC
CCACAGTAACTACATCGTGCAATTAGCAAGTCAACTTTCCAGTCACTGTA
GACAGCAAATTTCACAAATTTCCTCGAATTACAGTTTTGAACCTAGGGAG
ACTACTCAGTTGGTACAATGTTTGCTGTGTATCTACGGGGACTCTCTATG
CCCTGATATTTCCACCACCAAGGCTATTCTCTGGAATTTCCCTTACCTTT
CATTCCTGTACCTCATTTGTTTCTCCTGTACTTTGATGAATTTTTACAAG
GCACCCTTTCCTCCCTCTTTCTCATATTTTGCTTTAACCCATTAGTCTCT
TTGGGATTTCTTTCCCATTCCCGGCTATTATACCCTCATTACTTTCCCCC
CTCCTCTTATCCACCCTTATTCC
TTTTTTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTT
TATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACG
AGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACA
TTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACC
TACTTGGTCAGGATGTATGATTGCTTTAATGTGCTCTTGGATTCGGTTAG
CGAGAATTTTATTGAGGATTTTTGCATCGATATTCACAAGAGAAATTGCT
CTGAAGTTCTCTATCTTTGTCGCCCTTTTCTGTGTTTCATGTATCATATC
ATTAGTGCCTTCTTTTTCTTTTAAGACCTCGTTAATCTTCATATTTCTCC
ATCTTTTTATTGTTATATTTATTTTCTCCCACCCCCTATTTATATCTTTC
TACTAATATTTTCTTTTACCTATTCCCCCTTTTTATTTGCGCCTTTCTTC
ACTCTCTTTTCTCTCTCTTTCTCCTTTTTTCTTTTTATTTCTCGTTCTTC
CCTACCTTCTTCCCTCGTTCACCCCTCCTTTCTATCTCCTCTTTTCCCTC
TTTTTCCCCCGTCTTTCACCTTCCTTTATTCATATACCTAATTCCCTCCA
TTCCTTCCCCTTTTTTTCACCCCCTCTTTTCTATCCTCTTTCCCCTACAT
TCCTCACTTTCTATTTTCCACAATTTTTTCCCCTACTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_h03.b1 MSMg01no448_h03.b1 CHROMAT_FILE:
MSMg01no448_h03.b1 PHD_FILE: MSMg01no448_h03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:43 2005
         (444 letters)



>mm_chr6_33517589_33518433
          Length = 845

 Score =  748 bits (387), Expect = 0.0
 Identities = 430/445 (96%), Gaps = 3/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   gaattccagttccgattcacgcttttgtgctagaaaatgcttccattggcttagtactca 61
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gaattccagttccgatggaagcttttgtgctagaaaatgcttccattggcttagtactca 586

                                                                       
Query: 62  aagaaacactcgaatattcttacttcctaagttggaaggaaattaatgtgaagaaatcaa 121
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 585 aagaaacactcgaatattcttactccctaagttggaaggaaattaatgtgaagaaatcaa 526

                                                                       
Query: 122 catgacaggtgatgaagaataatggccttacgtgactgagagaaaaaggacagatagtga 181
           |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 525 catgacaggt-atgaagaataatggccttacatgactgagagaaaaaggacagatagtga 467

                                                                       
Query: 182 gctctttc--aaaaaaaaaattttaagaatcaaaatacagttgcataacagcattgctaa 239
           ||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gctctttcaaaaaaaaaaaaatttaagaatcaaaatacagttgcataacagcattgctaa 407

                                                                       
Query: 240 gcttcctgaggaagctaatcagaactggcagccacagagcatgagcagtaccacagctca 299
           |||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 406 gcttcctgaggaagataatcagaactggcatccacagagcaggagcagtaccacagctca 347

                                                                       
Query: 300 ctggaagcatctgcatcacagagggacaggtggctttaaagaacagtacctgaaaaccca 359
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 346 ctggaagcatctgcatcacagagggacaggtggctttaaataacagtacctgaaaaccca 287

                                                                       
Query: 360 cagtaactacatcgtgcaattagcaagtcaactttccagtcactgtagacagcaaatttc 419
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 286 cagtaactacatcgtgcaattagcaagtcaactttccagtcgctgtagacagcaaatttc 227

                                    
Query: 420 acaaatttcctcgaattacagtttt 444
           ||||||||||| |||||||||||||
Sbjct: 226 acaaatttcctggaattacagtttt 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space:   362390
Effective search space used:   362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)