BAC Information

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BAC

Clone NameMSMg01-448I19
Chromosome6 (Build37)
Map Location 74,500,731 - 74,501,177
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448I19.T7 (MSMg01no448_i19.b1)MSMg01-448I19.TJ (MSMg01no448_i19.g1)
ACCAG536736AG536737
length1,099768
length of high quality
(start - end)
---447 (80 - 526)
definitionCHROMAT_FILE: MSMg01no448_i19.b1 PHD_FILE: MSMg01no448_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:51 2005CHROMAT_FILE: MSMg01no448_i19.g1 PHD_FILE: MSMg01no448_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTTGCGCTTTCTACATACGTCACAATTACCCCAGAATAGCTGTCTTCGT
CTGTTGTGTATCCGCCGTCGGCGTTCGCCGTACGTCGGTTATCGTCGCAT
CTATACTACACCCACCAAGACTCCATGGATCAATATACGAACGAACATGC
GAGAATATGATGCGATAGGGAGTGCGTGTCTCGACGGCAGAGGCGGGCCC
TTGGTACGCTAGACGCCCAAAAATGCGCGAAAGATAGGAAACTGCCAACA
TCTGTAAACGAATATAGCTATTACGATTACATTCAGGCCGGCCGCGTTAC
CCTGCTTATCGCGTCTCGCCTCGTACGTGTCGCACACATCTCGAGCGTTT
CTGTATTTTTCAACCGTGTACATACACGTTATATAAGCGGGTGTTCGTGC
GACTCCGCTATTCTCACCGCTTTGTTTGTACGCATCGCTCCGCTCTTATA
CCGTCATCGTAACTGTTATTACGTAGCCGCCATTATATTACCGCACCGGT
CTGTGGGTGTGTCTATTGAGTGATTGTGTGTTCATATCCGCCACTGAACG
TATCGCTGCCACCTTCTGTTGCCTGGGATATTCCGACCAATACTTTGTAC
ACTACCCTATTCCAGTTTCACGTTTGTGCCGCCGCGTCCCAATATCCCGT
CGNTTTTTCTCTTACCGCCGCCGCGCTTCGTATTCCCTTTGTCGACTCCT
CTTCTCTCACGTTCGCCTCTATTGCCGCGCCATATTTCCTGTAATCGCCT
TCTGTATACGTTATTTCGCTTACAGTGGGCGTCGTATCCACTTGATAGAA
CTCCGGAATACGACGTCGGAAACGTGGCGCCATTATGAGTCTCTCCACGC
GCCGTCATCACGTCATAATCTCGCGCAAAATCTTGTGCCCTCGCTTGCAC
ACGCGGCGCCACTTTCCTTATATCATTATGCGGTCTCTGTGCCGCGAGTC
CGTATATTACTCGTGTTGGATATGGAGACCGACTTGTCGCCGTCCCGCGT
TGGGATTGCGTTACCGTATATCCTGACCGCCNTGGATCGGTCTCTGACGA
TCTTGACTGCATGCAGTCGAGCATTTATTTCGGCTGCGGCCATGAGTTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGGGTCCATTTGTCTTCA
CGAATGTGTCAGAAAAGACTGTAAAGGCATCACGGAGTGTGTTCCTCAGG
GGAGTTTTATCTGCTCTTTAATACAGTAGCCATTTGTAAAATGCTGCAGG
AGAAAAAATAAGTCAGAAGAAACTCATCAGGGCTAATGCACCTTACTTTG
AAAAGGCAGTACAAATGAAGCAAGAGAATGCTTTACTGAATGTTTTCTTT
CAGGCCTGAAGAGTAATCATAATGGTTCAGGAAGAAGATCATGTTCACAG
GTAAAATACAGGCATTCTCTCTCATGTTTGTTTCTATATATGTTTGTTTA
ATATAACATCAGCCCCCAGAAAACTATCTCATTAAAACATTATGATAGAT
GTCTATTTCAGTTAGAAACCAAGTGCAAATAATTTAGAATGAAACAAGTA
GAGGAATTATGCGTAAAATTTCTTCTCTCTTAAAATGTTCCATAGCTTTG
AACAAGTATGTTTGTATACTGTAATACCCCACCGACTCCCTATAATGATT
TATCGGCCGGCTTGATAGTATAACAATAGGTAAATGGTTATACACACTCC
CACCTTCCTTTCTTCTCTCGCCCCAACTTTCTTTCCCTTTATTTCGACCT
CTTTCGCTTCCCCTTTACTATTTTCTCCTCCCCATTTATTTTTTCCTCCC
CCTTCTCCTCCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_i19.g1 MSMg01no448_i19.g1 CHROMAT_FILE:
MSMg01no448_i19.g1 PHD_FILE: MSMg01no448_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:51 2005
         (447 letters)



>mm_chr6_74500531_74501377
          Length = 847

 Score =  826 bits (427), Expect = 0.0
 Identities = 442/447 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagggtccatttgtcttcacgaatgtgtcagaaaagactgtaaaggcatcacggagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagggtccatttgtcttcacgaatgtgtcagaaaagactgtaaaggcatcacggagtg 260

                                                                       
Query: 61  tgttcctcaggggagttttatctgctctttaatacagtagccatttgtaaaatgctgcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttcctcaggggagttttatctgctctttaatacagtagccatttgtaaaatgctgcag 320

                                                                       
Query: 121 gagaaaaaataagtcagaagaaactcatcagggctaatgcaccttactttgaaaaggcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagaaaaaataagtcagaagaaactcatcagggctaatgcaccttactttgaaaaggcag 380

                                                                       
Query: 181 tacaaatgaagcaagagaatgctttactgaatgttttctttcaggcctgaagagtaatca 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaaatgaagcaagagaatcctttactgaatgttttctttcaggcctgaagagtaatca 440

                                                                       
Query: 241 taatggttcaggaagaagatcatgttcacaggtaaaatacaggcattctctctcatgttt 300
           ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taaagggtcaggaagaagatcatgttcacaggtaaaatacaggcattctctctcatgttt 500

                                                                       
Query: 301 gtttctatatatgtttgtttaatataacatcagcccccagaaaactatctcattaaaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttctatatatgtttgtttaatataacatcagcccccagaaaactatctcattaaaaca 560

                                                                       
Query: 361 ttatgatagatgtctatttcagttagaaaccaagtgcaaataatttagaatgaaacaagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttatgatagatgtctatttcagttagaaaccaagtgcaaataatttagaatgaaacaagt 620

                                      
Query: 421 agaggaattatgcgtaaaatttcttct 447
           ||| |||||||| ||||||||||||||
Sbjct: 621 agaagaattatgtgtaaaatttcttct 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)