BAC Information

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BAC

Clone NameMSMg01-448M13
Chromosome6 (Build37)
Map Location 75,859,933 - 75,860,299
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143, EG668145
Downstream geneEG546907, LOC100042952, LOC668153, EG668155, LOC100042956, Ctnna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448M13.T7 (MSMg01no448_m13.b1)MSMg01-448M13.TJ (MSMg01no448_m13.g1)
ACCAG536914AG536915
length756755
length of high quality
(start - end)
368 (63 - 430)409 (81 - 489)
definitionCHROMAT_FILE: MSMg01no448_m13.b1 PHD_FILE: MSMg01no448_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:10 2005CHROMAT_FILE: MSMg01no448_m13.g1 PHD_FILE: MSMg01no448_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATTGTATCCTTCCTTCTGACAGGAAGAAATGAATAGTGCTGAAACTATA
ATTTTCGCTTAAGAATGAATAAAATTTAACTGTGAATGAGTTTTCTCTCA
TTGGTACTTCTAGATAATCTCTGGTCCCATAAGAATAATTTTTATTAATT
ATTTTCATTTAGTATTTAGAACAATGCAGCTATGTTAGTCAGATATCTGT
TGCTAATATAACAGTTTGAAAGATGATGATGATGAAGATTATTTTTTTTT
ATTGAGAGATTCTATGTGTTTTTCTGTTCAGTTATTCTTAGGAACCTTAA
ACGGACTTTAGATTTCCTGCAGATGAAGATGCTTGTGAGTATTAACGGGT
GCTGGGGACTGAATTTTTGTTCTGTGCATGAGCACCATGCGTTATGATAC
ACTGAACTATCTTATACAATCATTGCCTAATTACTAACAAAATGATGCTT
GTCTCCCCCAATTTATTGATTTATTCTTTTTATTCCTTGGCTTCCTTTCT
CACCTTACCCCCAACACCTGGTAGTGCTACCCGATCTACTTTATTGCCTG
TATACGACCGAAACACCCCTCTTATAATTCCATGCACCTGCCCTTTCCTT
TTTTCGCTTCTTGACGGAATCTATCTATACACCCCCCTTCTATGCATTAC
TCCCCCTATTGGTTTTCATTCTCCTTCTCCCTTAATCTTTTTGCTGCGAG
ATAATC
NNNNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTGATCTCTGAACTCC
ATCTTTAATTGGGTTATTTGGGTTAGTTGAGACTAGTAATGGTGCAGGAA
ATAGAACTTAAAGTGACTACCATGTGTAGCTGAGCAGGACTCCCAGGGGA
GAAATAAGAAAACAAAACAAAACAAACAAACAAACAAAAACACACACACA
AAATCTTTGACTCAACCTGTGTCCTACCCACTTGCTATGCAGGGATAGTG
ATAGATCAAAGACTGAGGAAATGGACGCTTATTGGCTCAAATTCCGACCC
ATCCTGTGGGCAAGAACTAATCCCTGACACTAAGCTTGAAAACAGGAGCC
TAAAATAATTTCCCTCTAAGTGACTTTACCTGGAAGCCAATGGAAATAGT
GCAGAGACAAACAGCCAAACATTAGCTACAGCTCTGGAGAATTCTTGTGG
AAGAGTTTGGAGAAGGATTAAGGAACCTGAAGAGGATAGGGAGTCCCTGG
GTAAAAAATAGGGGACCCTAATCTAAAACCTGTGGGATCCCCCAGCTGAT
CCTCCCCCCCAAAAGGGAACTGGACTGGACTTATGCTTTTGTACCAAAAA
GGGCTTTGGCTTTTTTACCCCCCCCCCCAACGGGGTAAACTTGTTCCTTA
CCCGTTGGTTTGCTGGGATTCCACGCCCGAAATTGCCCTCTCTCCTCCCC
TTAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_m13.b1 MSMg01no448_m13.b1 CHROMAT_FILE:
MSMg01no448_m13.b1 PHD_FILE: MSMg01no448_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:10 2005
         (368 letters)



>mm_chr6_75859590_75860356
          Length = 767

 Score =  688 bits (356), Expect = 0.0
 Identities = 365/368 (99%), Gaps = 1/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttctgacaggaagaaatgaatagtgctgaaactataattttcgcttaagaatgaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ccttctgacaggaagaaatgaatagtgctgaaactataattttcgcttaagaatgaataa 651

                                                                       
Query: 61  aatttaactgtgaatgagttttctctcattggtacttctagataatctctggtcccataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 aatttaactgtgaatgagttttctctcattggtacttctagataatctctggtcccataa 591

                                                                       
Query: 121 gaataatttttattaattattttcatttagtatttagaacaatgcagctatgttagtcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gaataatttttattaattattttcatttagtatttagaacaatgcagctatgttagtcag 531

                                                                       
Query: 181 atatctgttgctaatataacagtttgaaagatgatgatgatgaagattatttttttttat 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 530 atatctgttgctaatataacagtttgaaagatgatgatgatgaagatt-tttttttttat 472

                                                                       
Query: 241 tgagagattctatgtgtttttctgttcagttattcttaggaaccttaaacggactttaga 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgagagattgtatgtgtttttctgttcagttattcttaggaaccttaaacggactttaga 412

                                                                       
Query: 301 tttcctgcagatgaagatgcttgtgagtattaacgggtgctggggactgaatttttgttc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 411 tttcctgcagatgaagatgcttgtgagtattaacgggtgctggagactgaatttttgttc 352

                   
Query: 361 tgtgcatg 368
           ||||||||
Sbjct: 351 tgtgcatg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)