BAC Information

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BAC

Clone NameMSMg01-449C07
Chromosome6 (Build37)
Map Location 67,237,861 - 67,238,129
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1
Downstream geneIl12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igk, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449C07.T7 (MSMg01no449_c07.b1)MSMg01-449C07.TJ (MSMg01no449_c07.g1)
ACCAG537188AG537189
length735751
length of high quality
(start - end)
555 (78 - 632)269 (93 - 361)
definitionCHROMAT_FILE: MSMg01no449_c07.b1 PHD_FILE: MSMg01no449_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:40 2005CHROMAT_FILE: MSMg01no449_c07.g1 PHD_FILE: MSMg01no449_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAAGATCC
GCGGAATTCATTGTTTTTCATAACTGAGTAGTACTCCATTGTATAAATGC
ACCACATTTTCTGTATTCATTCCTCTGTTGAGGGACATCTGGGTTCTTTC
CAGCTCCTGGCTATTGTAAATAACGCTGCTATGAACATAGTGGAGCATGT
GTCCTTATTACAAGTTGGGACATCTTCTGGGTATATGCCCAGGAGAGGAA
TTGCTGGATCTTCTGGTAGTACTATTGTCCAATTTTCTGTGGAACCACCA
GATTGATTTCCAGAGTGGTTGTATTTTCTTGCAATCCCACCAACAATGGA
GGAGTGTTCCTCTTTCTCCACATCCTCGCCAGCATCTGCTGTCACCTTTA
TTTTTGATCTTAGCCATTCTGACTGGTGTGAGGTAGAATCTCAGGGTTGT
TTTGATTTGCATTTCCCTGATGATTAATGATTTTGAACCTTTTTTTCAGG
TTCTTCTCAGCTATTCGGTATTCCTCAGTTGAGAATTATTTCTTTAGCTC
TGTATCCCATTTTTTAATAGGGTTATTTGATTTTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCCCTATCTGACTTAGGATAGGTAAAGATCCTTTC
CCAATCTGTTGGTGGCCTTTTTGTCTATTGAATAGAGTCTTTTGCCTTAA
ATTTGGAGTTCTATGAACCCCCATTTGTTGATTCC
NCCCAGGCATGAAGTGGGAGGCCTGGNGGCGCCTGGTTTCGAAGTAGGGN
GAACNANAGAAGGTTACCAACATAAGAGAATTTCNGGNAGNTTCAACTTG
ATTTTATATACCTTTTAATTTTATCCCTTATGTATTCATGGTTTACTTGG
GTGCTAACATCTATTATAAAGTTAGAAAACTTTTGCTGTGTGGGAGACCT
GTGTGTCCGCATGGGGGATGGAATGGTGAATCCATATTCTTAGCAGCTAG
GTTTTTTTGTATGTGCCTCACACTTTAAAAAGAAAGTGAGACTTGGTCAC
TATATTTTAAAAAAAATCTATTTTTTATTTTTTATNAGNAGNGATAAGCC
TAGCCTCCATGTATCTCATAAAGAATCTAGATTAACTTTCTATTAATAGT
GATAGGCCTTAGTCAAGCCTGGTATTTAAGTATATAATGACCAGGGGTTT
TGTTCCTTATATTTAGTTTTGGAGATAGTTATTAAAAATAGAGTTCCAGT
ATGTTTCTTACTGGCTGATAACTTTTGTTATATAGACCACAACTAGGCTA
GCCTCTAGCTCATGAGTGCTGTGATTATAAGTAGGAGCCACTGCTACTAG
ACTTTTTATAGCGTTTTTCAACTTACTAAAAATATTCTTGGACTTTCACG
GTTTTCTAATAAGTTTTTTTTTTTTTTTTCTATCCTTTCTCCAGAAAATA
TTTATTATTATTCTATACTTGTACCATTGAATAAATAATATTCTTCATCC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_c07.g1 MSMg01no449_c07.g1 CHROMAT_FILE:
MSMg01no449_c07.g1 PHD_FILE: MSMg01no449_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:40 2005
         (269 letters)



>mm_chr6_67237661_67238329
          Length = 669

 Score =  381 bits (197), Expect = e-110
 Identities = 250/274 (91%), Gaps = 10/274 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaacttgattttatataccttttaattttatcccttatgtattcatggtttacttgggt 60
           |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct: 201 tcaacttgattttatataccttttaagtatattccttatgtattcatggtttacttgggt 260

                                                                       
Query: 61  gctaacatctattataaagttagaaaacttttgctgtgtgggagacctgtgtgtccgcat 120
           |||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gctaacatctaacataaagttagaaaacttttgttgtgtgggagacctgtgtgtccgcat 320

                                                                       
Query: 121 gggggatggaatggtgaatccatattcttagcagctaggt-----ttttttgtatgtgcc 175
           ||||||||||||||||||||||||||||||||||||||||     |     |||||||||
Sbjct: 321 gggggatggaatggtgaatccatattcttagcagctaggtaagaat-----gtatgtgcc 375

                                                                       
Query: 176 tcacactttaaaaagaaagtgagacttggtcactatattttaaaaaaaatctatttttta 235
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||  ||  |
Sbjct: 376 tcacactttcaaaagaaagtgagacttggtcactatattttaaaaaaaatctagattaaa 435

                                             
Query: 236 ttttttatnagnagngataagcctagcctccatg 269
           |||||||| || || |||||||||||||||||||
Sbjct: 436 ttttttattagtagtgataagcctagcctccatg 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)