Query= MSMg01no449_h18.b1 MSMg01no449_h18.b1 CHROMAT_FILE:
MSMg01no449_h18.b1 PHD_FILE: MSMg01no449_h18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:07 2005
(608 letters)
>mm_chr6_18470083_18471085
Length = 1003
Score = 949 bits (491), Expect = 0.0
Identities = 510/519 (98%), Gaps = 5/519 (0%)
Strand = Plus / Minus
Query: 90 tctatctatgacattgtttcataaatattatgaattaaactgtattttgtattcattggt 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 tctatctatgacattgtttcataaatattatgaattaaactgtattttgtattcattggt 944
Query: 150 tactcaacttcaatatgaatatttatgctattttctctcaaataataccatcatatttcc 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943 tactcaacttcaatatgaatatttatgctattttctctcaaataataccatcatatttcc 884
Query: 210 aaatgctttaaaatgaacacaataaatactaactttaactgctttggttttttttgtttg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 aaatgctttaaaatgaacacaataaatactaactttaactgctttggttttttttgtttg 824
Query: 270 tttgtttttgtttttgctttctatctcgaataataaaagtaaatattgctaatagttgag 329
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 823 tttgtttttgtttttgctttctatctcgaatgataaaagtaaatattgctaatagttgag 764
Query: 330 acttggggcaatgtgaggtgacatttatgtctcaaaaatacaatgtattagaaattccat 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 acttggggcaatgtgaggtgacatttatgtctcaaaaatacaatgtattagaaattccat 704
Query: 390 taactacaaatacgcggtttgtgcttttctagagagtacaaaggtatcgattcacttcac 449
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct: 703 taactacaaatacgcggt-----attttctagagagtacaaaggtattaattcacttcac 649
Query: 450 ttatatgtagaactttgtgtctgtaacttaagcaagtcctaaccatgtcaagcataagca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ttatatgtagaactttgtgtctgtaacttaagcaagtcctaaccatgtcaagcataagca 589
Query: 510 ctttctgcataattactaagactgagacgcatcatctttagcttcttttaaattctttga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ctttctgcataattactaagactgagacgcatcatctttagcttcttttaaattctttga 529
Query: 570 acactgaacttgcttttgtattgaatagaacatatccag 608
|||||||||||||||||||||||||||||||||||||||
Sbjct: 528 acactgaacttgcttttgtattgaatagaacatatccag 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1003
Length adjustment: 10
Effective length of query: 598
Effective length of database: 993
Effective search space: 593814
Effective search space used: 593814
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_h18.g1 MSMg01no449_h18.g1 CHROMAT_FILE:
MSMg01no449_h18.g1 PHD_FILE: MSMg01no449_h18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:07 2005
(497 letters)
>mm_chr6_18437376_18438272
Length = 897
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%)
Strand = Plus / Plus
Query: 1 aacccattaacaatgcctattaaggttttctaaaattcttccactaattttccaaccaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacccattaacaatgcctattaaggttttctaaaattcttccactaattttccaaccaac 260
Query: 61 ctttcctccctcaaaccctcctgacatcttattaccactttccaaatgggaacaaaactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttcctccctcaaaccctcctgacatcttattaccactttccaaatgggaacaaaactc 320
Query: 121 catggagccattgattatagtcatgaagagatgtggcttcttaattccaccagtgagatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggagccattgattatagtcatgaagagatgtggcttcttaattccaccagtgagatt 380
Query: 181 gtattatttttgttaagatacttgagcagaaagctcactaccttttatattttgggatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtattatttttgttaagatacttgagcagaaagctcactaccttttatattttgggatct 440
Query: 241 ggatatatagtctagaactcagtattcttttgcctcggtctctagagttaggattgcagg 300
|||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatatatagccaagaactcaggattcttttgcctcggtctctagagttaggattgcagg 500
Query: 301 tacatatcaacatgcttacctgacgaattttcagagtgtcactccaggaaggaggggaca 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatatcaccatgcttacctgacgaattttcagagtgtcactccaggaaggaggggaca 560
Query: 361 ctcacccactactacatcatcaccttcatgctaaccttcacagattatttagagactttt 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctcacccactactgcatcatcaccttcatgctaaccttcacagattatttagagactttt 620
Query: 421 aaaaaataatttaaaactcatttcagggagctactcagatgattcagtaattaagaacac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaataatttaaaactcatttcagggagctactcagatgattcagtaattaagaacac 680
Query: 481 cagatgctcttgcagaa 497
|||||||||||||||||
Sbjct: 681 cagatgctcttgcagaa 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space: 431969
Effective search space used: 431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
