BAC Information

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BAC

Clone NameMSMg01-449I16
Chromosome6 (Build37)
Map Location 140,162,778 - 140,246,215
singlet/doubletdoublet
Overlap geneLOC100042680
Upstream geneEG632971, LOC100043898, Pik3c2g, Plcz1, Capza3
Downstream geneLOC100039020, LOC269810, Plekha5, Aebp2, EG664868, LOC664875, Pde3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449I16.T7 (MSMg01no449_i16.b1)MSMg01-449I16.TJ (MSMg01no449_i16.g1)
ACCAG537488AG537489
length732748
length of high quality
(start - end)		334 (337 - 670)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no449_i16.b1 PHD_FILE: MSMg01no449_i16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:11 2005CHROMAT_FILE: MSMg01no449_i16.g1 PHD_FILE: MSMg01no449_i16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,162,778 - 140,163,111)(140,245,971 - 140,246,215)
sequence
TTTGTGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAACAA
GGCGCGGAATTCATTTTATATTCCTGGAACAGGAAAAGGCTTATACATAA
CTCAAGGGATACACTTGGCACCTGTTAAAGAAAAAAAATAAATGTCTATG
TTTATCAAGGTGGCTACTATTTAACTTACAAAATGCAGTGGTCCATGGGA
ATCTGAGCATTGCAGTAGCCCGATTGAGAAAATGGTCAGTGCACAGCCCT
AAATACCCCTCATACTCTACCATCTCCTGTCATACCCTTCCACCTTTGCA
CCAGGATGTCTGTCCAGGACATCCCCAGATTTTTTCCTTGTAGTCCAATC
TCTGTCTCAGGATTTACTTCTAGAAGAAACCAAACTCAGAAAGAGTCCCA
GTGTACTTGTAGAGAGATTATCACACAAGGCACTCAAACGGCAACCAAGT
AAAGTTTGTAACATAGATAGGATGTTTCAGTTGGTCAACCAATGAGAGTG
GTCTTTTAGAAAGAAACAGAACACAGATCCCTCTACCCCAGCTCCCAACT
CCAGGTTCCACTCGAAGGAACAAGAAACTCTAACTCATACAATGAGGTGT
GGAATCAGGAACATGGCCGTGGCCATGACTCAACCCCACTCCTGTCCTGG
TAGATTCAACAGACAGTTCTGTGTCAGCCCCACTTGTGTGACGTGTCCCA
GAAATGGGGCATTGGCTTCTCTGGAGAAAGAT

AAAANCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTAACAGCCAGATTCATTAG
AGAGGCACCACTAATTCAAGGGGAAAAGGGATTAAATTTTTTCACTGTAT
TTTATAAAGCGTTACACATTAATTAGAATTTAGTATGTTTGGTTTTTAGA
CAACATCCACTTCATTTACAAATCTCCACAGATGAGATATTTATTAGTTT
GCTTTCTAATATTGATTTGTGCTAGTAACTGTGGGATTTTGTGGGACTAA
GTGAATGGCAGCATAGGGTTGTATANNTTCATTTTTCCTGCCTGAAGTCC
TTAACTCTGTCTTCTTGAGGTTCTGGCTTAGTCCAGATAGGAACAGTGCA
AAAGGGTAAAATGGAGAGAGACAAAAATAAAAGACTTCCTCAGAAAATGC
ATTTGAACTAGGCAATATTATGCTCCATTGCATTCTGACCTGGGAGACAG
TAGTATGCATGTTCTGTTTTCCTTCCCAGAAGATGTTCAGGCGAGACCTG
GATGTGGGAGGTAACCGTTTTCGTGGATTAAGCCTTGAAGTGATGTTTTT
TTCTTTACTCTTATCCCTCTCTTTCTCACCTATCTCCCTCTTTGTTTGTC
CTTCTCCTCCACCTCACTTTTTTTTTTTTTTTTTCACCTCTGTTCTCACT
TCCGCACTCGCTTCCTCTTCCATCTCCCGTCTCTTTTTTTCTATGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_i16.b1 MSMg01no449_i16.b1 CHROMAT_FILE:
MSMg01no449_i16.b1 PHD_FILE: MSMg01no449_i16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:11 2005
         (334 letters)



>mm_chr6_140162578_140163311
          Length = 734

 Score =  646 bits (334), Expect = 0.0
 Identities = 334/334 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtagtccaatctctgtctcaggatttacttctagaagaaaccaaactcagaaagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtagtccaatctctgtctcaggatttacttctagaagaaaccaaactcagaaagagt 260

                                                                       
Query: 61  cccagtgtacttgtagagagattatcacacaaggcactcaaacggcaaccaagtaaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagtgtacttgtagagagattatcacacaaggcactcaaacggcaaccaagtaaagtt 320

                                                                       
Query: 121 tgtaacatagataggatgtttcagttggtcaaccaatgagagtggtcttttagaaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtaacatagataggatgtttcagttggtcaaccaatgagagtggtcttttagaaagaaa 380

                                                                       
Query: 181 cagaacacagatccctctaccccagctcccaactccaggttccactcgaaggaacaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaacacagatccctctaccccagctcccaactccaggttccactcgaaggaacaagaa 440

                                                                       
Query: 241 actctaactcatacaatgaggtgtggaatcaggaacatggccgtggccatgactcaaccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctaactcatacaatgaggtgtggaatcaggaacatggccgtggccatgactcaaccc 500

                                             
Query: 301 cactcctgtcctggtagattcaacagacagttct 334
           ||||||||||||||||||||||||||||||||||
Sbjct: 501 cactcctgtcctggtagattcaacagacagttct 534


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_i16.g1 MSMg01no449_i16.g1 CHROMAT_FILE:
MSMg01no449_i16.g1 PHD_FILE: MSMg01no449_i16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:12 2005
         (245 letters)



>mm_chr6_140245771_140246415
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaacagccagattcattagagaggcaccactaattcaaggggaaaagggattaaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attaacagccagattcattagagaggcaccactaattcaaggggaaaagggattaaattt 386

                                                                       
Query: 61  tttcactgtattttataaagcgttacacattaattagaatttagtatgtttggtttttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcactgtattttataaagcgttacacattaattagaatttagtatgtttggtttttag 326

                                                                       
Query: 121 acaacatccacttcatttacaaatctccacagatgagatatttattagtttgctttctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaacatccacttcatttacaaatctccacagatgagatatttattagtttgctttctaa 266

                                                                       
Query: 181 tattgatttgtgctagtaactgtgggattttgtgggactaagtgaatggcagcatagggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattgatttgtgctagtaactgtgggattttgtgggactaagtgaatggcagcatagggt 206

                
Query: 241 tgtat 245
           |||||
Sbjct: 205 tgtat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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