Query= MSMg01no449_n09.b1 MSMg01no449_n09.b1 CHROMAT_FILE:
MSMg01no449_n09.b1 PHD_FILE: MSMg01no449_n09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:34 2005
(353 letters)
>mm_chr6_12185575_12186327
Length = 753
Score = 553 bits (286), Expect = e-162
Identities = 326/346 (94%), Gaps = 11/346 (3%)
Strand = Plus / Plus
Query: 4 ggaattctttatactgtccctgacatggccatgacatggccatgacattcttttatagca 63
|||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 215 ggaattctttatactg-----------gccatgacatggccatgacattcttttatagca 263
Query: 64 tctatgattcacctgcacaaggtgctgtctataatcatcttatcctgaaagggaggcaca 123
||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctatgatttacctgcacaaagtgctgtctataatcatcttatcctgaaagggaggcaca 323
Query: 124 tccatgaggcattatctattgctgagatttatagacagttattggttgttagagaaggac 183
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 324 tccatgaggcattatctattgctgagatttatagacagttattggttgttcgaggaggac 383
Query: 184 cttgatatagccactgcccattcttcttcagttagcttctttaaggaacactaacaaaac 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctttatatagccactgcccattcttcttcagttagcttctttaaggaacactaacaaaac 443
Query: 244 tatcaggctatacacaaaaagacaggaaaacagcagggctcaatgggaggaaggaggaac 303
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 taccaggctatacacaaaaagacaggaaaacagcagggctcaatgggaggaaggaggatc 503
Query: 304 aggggagtgtggagaggacaagtgtggagaggggagtgtggagagg 349
||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aggagattgtggagaggacaagtgtggagaggggagtgtggagagg 549
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space: 255936
Effective search space used: 255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_n09.g1 MSMg01no449_n09.g1 CHROMAT_FILE:
MSMg01no449_n09.g1 PHD_FILE: MSMg01no449_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:34 2005
(493 letters)
>mm_chr6_12338739_12339630
Length = 892
Score = 862 bits (446), Expect = 0.0
Identities = 481/498 (96%), Gaps = 11/498 (2%)
Strand = Plus / Minus
Query: 1 ccaagacagactggagacattacctcaaagccatcaatgagcttagtccttgtaaattaa 60
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 692 ccaagacagactggaaacattacctcaaagccgtcaatgagcttagtccttgtaaattaa 633
Query: 61 tagattctaggaaaccggaaaatctgaggggcatttaaggttgctattccttatggttgg 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tagattctaggaaaccagaaaatctgaggggcatttaaggttgctattccttatggttgg 573
Query: 121 ataatctcagtgcagtaatgacatacctgtagccagaggtggcacagaccagggaccagg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 572 ataatctcagtgcagtaatgacatacctgtagccagaggtggcacagaccagggaccacg 513
Query: 181 gtcactatagggctcaggatccagaatctggacatgaaaagaaagccgaaggctgagccc 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gtcactacagggctcaggatccagaatctggacatgaaaagaaagccgaaggctgagccc 453
Query: 241 actta----t-cttttttctgcagctgagaggactttatgatggcctaaaccacaacaat 295
||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 acttaccactac------ctgcagctgagaggactttatgatggcctaaaccacaacaat 399
Query: 296 tctatacaaatgtctaaaccttgactcctttagcgtcatggatgacagtacagtgtctca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 tctatacaaatgtctaaaccttgactcctttagcgtcatggatgacagtacagtgtctca 339
Query: 356 gtcagtgcaaccatagatcagagggactaacatagcagaagcagagtgctctcttgagaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtcagtgcaaccatagatcagagggactaacatagcagaagcagagtgctctcttgagaa 279
Query: 416 tagcagaagtgcaaaggtgaatgcacattaaaaaatactagtaatggtgtatttcatatg 475
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 278 tagcagaagtgcaaaggtgaatgcacataaaaaaatactagtaatggtgtatttcatatg 219
Query: 476 atttccttattcttctca 493
||||||||||||||||||
Sbjct: 218 atttccttattcttctca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
