NNNNAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCTAAGGCTCTAGTCTAACTTTGGTTCTGTGCTCAAGTCA
TCTTAGACTCACCATATGACATGGCTTCCTTATCCTTATAGAAAGTATGT
CAATGATATTCTCAGAATAGCTCATTCCTTACATCAGTGCTGGTCAAAAT
CTACTTACCACTGAAAGTAGCTTTCTGAAGTTCGGGAGACCTGGAGTAAT
AAAGGGATCATCAATATCCAGATTTCACATAGATTTTGTTTTGAAAAATC
ATTAATTATGTCCTAAGCCATCCATCCTGCAGGACATCTCTACTTTCTGT
CCAGTACCATCATTCAGTCTGGGTCTGGTTTCCATCTTTAAAGTCCAATT
GTTTCACCAGGCCATCCCCTTCCTTTTCCATTCCACTAGTGTTGCCATTG
CAATCAGGAAAAAGTTATTGGCTGCAAGCAAGTAAAACTAAATAAATATA
GAGAAATATACCACAATTAACAAGAGTGACACAGGTGAGAAAATATCAGC
AAGTGCCAGAATGTTTTAGTAAGAGTCACCTGCTTATTGCCAGACTTATG
CAGAAGGTGTTAATTCAAGAATGTCTTTAGTCCTTGTAAAACTTATGAAG
ATTCAGCATAAGAAACAGAATCCAAATCCACAATCCATTTATATGTTTTA
AAAATACAATGGAACATTTTCAGAAGTTATATCTTT

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTACATCTGTACCTA
ATTTTTGATTGTATTGATTTTTGCTTGCTTTCTTGATATCTATTTTCTTG
AGTTCTTAATATATTTTGTATATTAGTCCCCTATTAGATATGCAGTTGGT
TAAAATGTTTTCACATGCTTAGGCTTCTGATTTGTCTATTGATGGTGTCC
TTTTCCTTATAGAAGCTTGTCTGTTTTATGATATCTCATCTACTAAATGT
TAATCTTAATGCCTTCATTATCAATGTTCTTCTGAGAAAGTCCTCTCCTG
TATCAACCCACTTAAGGCTTTTCCCCACTTTTTTTTCTATAGATTCAGTG
TGTCTGGATTAGGTTATAGTCTTTGATCCAGTTGGATTTGAGTTTTGTTC
AGAGTGATAGGTATGGATCTATTTGCATTTTTTCTACATTCAGATAACTA
GTTTGACCAGGACAGCATGTTGAAGGTGCTGTGTTTTTTCAAATGTTCAT
TTCTGGCATGTTTATCAAAAAAAAACAGGTATCTATATGTGTTTGTCTTT
ATGCCTGGGTTGCAAATTAAATTTTATTGATCAAAATGTCTGTTTTTATG
CCAATACCATATATATCTATTATGCCAATAATATATATATATATATATAT
ATATATATATATATATATATATATATATATATATATATATAN

Query= MSMg01no449_n14.b1 MSMg01no449_n14.b1 CHROMAT_FILE:
MSMg01no449_n14.b1 PHD_FILE: MSMg01no449_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:35 2005
         (647 letters)



>mm_chr6_110884304_110885350
          Length = 1047

 Score = 1197 bits (619), Expect = 0.0
 Identities = 637/643 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctaaggctctagtctaactttggttctgtgctcaagtcatcttagactcaccat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaggctctagtctaactttggttctgtgctcaagtcatcttagactcaccat 264

                                                                       
Query: 65  atgacatggcttccttatccttatagaaagtatgtcaatgatattctcagaatagctcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgacatggcttccttatccttatagaaagtatgtcaatgatattctcagaatagctcat 324

                                                                       
Query: 125 tccttacatcagtgctggtcaaaatctacttaccactgaaagtagctttctgaagttcgg 184
           ||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 tccttacattagtgcttgtcaaaatctacttaccactgaaagtagctttttgaagttcgg 384

                                                                       
Query: 185 gagacctggagtaataaagggatcatcaatatccagatttcacatagattttgttttgaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagacctggagtaataaagggatcatcaatatccagatttcacatagattttgttttgaa 444

                                                                       
Query: 245 aaatcattaattatgtcctaagccatccatcctgcaggacatctctactttctgtccagt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaatcattaattatgtcctaagccatccatcctgcaggacatctctactttctgtccagt 504

                                                                       
Query: 305 accatcattcagtctgggtctggtttccatctttaaagtccaattgtttcaccaggccat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accatcattcagtctgggtctggtttccatctttaaagtccaattgtttcaccaggccat 564

                                                                       
Query: 365 ccccttccttttccattccactagtgttgccattgcaatcaggaaaaagttattggctgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccccttccttttccattccactagtgttgccattgcaatcaggaaaaagttattggctgc 624

                                                                       
Query: 425 aagcaagtaaaactaaataaatatagagaaatataccacaattaacaagagtgacacagg 484
           || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 625 aaccaagtaaaactaaataaatatagagaaatataccacaattaacaagagtgacacacg 684

                                                                       
Query: 485 tgagaaaatatcagcaagtgccagaatgttttagtaagagtcacctgcttattgccagac 544
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 685 tgagaaaatatcagcaagtgccagaatgttttagtaagagtcacctgcttattgacagac 744

                                                                       
Query: 545 ttatgcagaaggtgttaattcaagaatgtctttagtccttgtaaaacttatgaagattca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttatgcagaaggtgttaattcaagaatgtctttagtccttgtaaaacttatgaagattca 804

                                                      
Query: 605 gcataagaaacagaatccaaatccacaatccatttatatgttt 647
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gcataagaaacagaatccaaatccacaatccatttatatgttt 847


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)