BAC Information

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BAC

Clone NameMSMg01-450G04
Chromosome6 (Build37)
Map Location 74,085,771 - 74,085,882
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450G04.T7 (MSMg01no450_g04.b1)MSMg01-450G04.TJ (MSMg01no450_g04.g1)
ACCAG538128AG538129
length779758
length of high quality
(start - end)
112 (126 - 237)471 (76 - 546)
definitionCHROMAT_FILE: MSMg01no450_g04.b1 PHD_FILE: MSMg01no450_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:17 2005CHROMAT_FILE: MSMg01no450_g04.g1 PHD_FILE: MSMg01no450_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGTTCAGGGGGNGN
GGAANNCANCNAATATCTTTACTCTGGGGNNAGAANNCAACACGAGCGCC
GGGCGGGCTCNNCAGCGGTTACACCACTGAAGGCATTAACTTTCTCACCC
AGGAACTAATCTGTAAACTTTATATCAGAAAGAAGCGAAGTATGATCCTA
TGAACCCCTCCTTCATTCTCAACTGATCCCAGGGAGTCTTGCGTATGCAA
AATCTTGTTCAGGTAAACCTAGTTGCTGCGATTCTAAAGGGTGACTCTAA
GCTTTACACTGCCCCATATTTTTTTTTTTCAGCAAGGCAAGAGCAACCAA
CCACACGGGAAATTCCCTCCGCCCGCAGCAGCCAGAAAGAATCTCTGGCC
ACAAACATAACCTATTGTTTGCTTGATCATTATCACCCATCGGATGGAGC
CACATACATTAAGCTTGCAGTTGAGTTCTTAGGAGGACCCTCCATATACT
GCCCTATCCAGTGATTCCTCCCCTAACCTGTTTCTAAATATTGACCCTAT
CGCTTACTCTATCATGACTTCGCTCGACCGCATCCCGATCTTTCCTGTCT
CTCCATGAATCTATGTTCTCCCCCATTCCTCCTCCTTCTTTCGTATCCCT
CTCTGCCCCTTTTCCGTTTTCCTTCTCCCCGTCCCTCCCCCCTCTGCTCT
TTCCCCCCCTCCCTCCTTTTTTCCTTTTCTTCTTCCACTCTCTCTCCTTT
CTTTTTCGCTTATTCCCTTTCCCACGCCN
AGAGCAAGGAGGTAGGAGTGCGGGGGGGCGCCTGTGTCTCGCAAATTTAA
GTGGAGCTATAGAATTATCCGCGGAATTCAGAACTCTTCAGCTGGGGAAT
GGTGGTAATGAAGTGTTCCCATAAAACAGACTGTTGAGAAGGATTCAACT
GTGTGAATTCAGAACTCTTCAGCTGAGGAATGGTGGTAATAAAGTGTTCC
CGCAACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTT
CAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGG
TCTTGAACTTTCTAACGAAATTCAATACAGTCTATCAGAAGTAAAGTGGG
GAATAGCTTTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAA
GACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGTCTGG
CCTTGAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGG
AAATAGCTTTACAAGGTATGTTTGGCCTTGAACTTGCTCTAGTGTTAGGA
GCCTTTTTGTTCCTTTTCAAATGTTATCAAGCGTTTAAGGCAGGTCTGAA
TATTCTGGACGAATTTCAGGGCATTCTATCATAATTAAAGCGTCTATATA
AGAGTATTAAGTTTCTGATTAATTCTCCCGTACAATTTTCGATCTCAGGC
CCTTTCTAGGGCCCTCTGACCCTGTATGAAACTTTTATGTCCATGTACTA
AATTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_g04.b1 MSMg01no450_g04.b1 CHROMAT_FILE:
MSMg01no450_g04.b1 PHD_FILE: MSMg01no450_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:17 2005
         (112 letters)



>mm_chr6_74085571_74086082
          Length = 512

 Score =  194 bits (100), Expect = 2e-54
 Identities = 109/112 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgaaggcattaactttctcacccaggaactaatctgtaaactttatatcagaaagaag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 actgaaggcattaactttctcacccaggaactaaactgtaaactttatatcagaaagaag 260

                                                               
Query: 61  cgaagtatgatcctatgaacccctccttcattctcaactgatcccagggagt 112
            |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagtaggatcctatgaacccctccttcattctcaactgatcccagggagt 312


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 512
Length adjustment: 8
Effective length of query: 104
Effective length of database: 504
Effective search space:    52416
Effective search space used:    52416
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)