BAC Information

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BAC

Clone NameMSMg01-450N06
Chromosome6 (Build37)
Map Location 8,894,850 - 8,895,093
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1, Ica1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450N06.T7 (MSMg01no450_n06.b1)MSMg01-450N06.TJ (MSMg01no450_n06.g1)
ACCAG538462AG538463
length796807
length of high quality
(start - end)
353 (72 - 424)244 (80 - 323)
definitionCHROMAT_FILE: MSMg01no450_n06.b1 PHD_FILE: MSMg01no450_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:53 2005CHROMAT_FILE: MSMg01no450_n06.g1 PHD_FILE: MSMg01no450_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATCGAAGAGGATCC
GCGGAATTCCAGCATTAACTTCCAAGATTTCTTCTTTAATTCTTAAAGAG
AGCACTCACATATGAGACATTCTGAGGGAGTGGTTTGCTTATAAAAAGAG
TTTATACACTGGCTGAGGACATAGTTCAGTTGGTAAAGCAGTTATCCACA
AGGATCCAATCTGATCCCCAGTGCCCAAGTGAAAACGAGGGGGAGGTGTG
CGTTTGTTAACTCCTGTGCTGGGAGAATGGATTCCTGGGACTCTTGGACC
TAGCCTAATTAGTGAGTTCTATATTATTGATATGTCCTATGTCAAGAAAG
AAGATGGACATGGTCTGATCAGTGACACCTGAGTTGGAGCTCTGGCCTCT
AGAGGCATGGATACACACACACACACACACACACACACACACACACTCTC
ACACATACACACCTTCCTGTCTCCTATGCAACTAATCTATACCGAAAATC
AGTTTTCCGGTAGGAACGCCTCTTGATTTCTTTTTTCTTTATAGCTAATT
TCCTTCTTCCGTTCCTTCCCCTGGTATATCCCCCCCTTCCGACTTCCGTC
CCTCTCCCCTTCCCTCTTTTTTCCCCCCTCCCCCCTTTCCCGGCCCTTCC
CTTCCCTTTTTTTTCCCCCCCATTCCTTTCTCCCCTCCTCCTCCTTTCCT
GCTTTCTCTCTTTCTTTACCCTTCCTCCCTTTTCCCTTCTCTTCCCACTT
TTCTCCTCCTTTATTTTCATTTCTCCCTCTTTCTTCTTGTCCCCTC
NNCCGATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATGTCACCCAAGACAAC
TAAGTAAACTTCTGACCCCTCCACACCCCCAAGGTGTTTTGCTAGTATAA
AGAAGGATCATTTGAGAAGTGGTGAAGTGTTGGGTTTTGTTTTGTTTTTA
CAAGCCTAGAGTATTTGTTGTTTCAATGTAGTTGCATTTGGCTAATAACA
AGAATGCTTTAATAACAAGATCAATGGACTAGAGAGAAAAAATAGCCATC
AAGTTCTGGGAAGAAAAAAATAATGTTTTTCTTAAGCTCAATGTAAAAGG
CATTTTTCCTTTTAGAAGTAATTTATATGCTCAGTCTTTGTGTCCATATT
TCATTTATTCTGCTAGGCGACGAACTCAGGGTTCTCAAAGGTAGGTTGGT
TTTAATTATACTCACAAACTTCAGCTAGAAAATGAATACTGAATGAGAAA
TTACAGACAGTCTGCCTTGACAGGTAATTTGCATGTTTTCGATACCAATA
TCGACGCCTTACTCCATATTCTATACCTCCAACCTTTAATATATCGGACC
TATTTTTTTCTTTGCCTTCTTTTTTTTTTTTTCCAATCTTTTTCCTTAAT
TGGCTCCCTTTTATATATTTACCTTACATTTTCTCTTAACCCCTACCCTC
TTCCCAATCTATAATTTTCGTATTTTTCTATCTTTCTTTGTTTCCCTAAT
TTCAACCTTTCGCTTTTTTCTCTCCTCTTCTAATTAAATAATCTCTATTT
ATCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_n06.g1 MSMg01no450_n06.g1 CHROMAT_FILE:
MSMg01no450_n06.g1 PHD_FILE: MSMg01no450_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:53 2005
         (244 letters)



>mm_chr6_8894650_8895293
          Length = 644

 Score =  472 bits (244), Expect = e-138
 Identities = 244/244 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaatgtcacccaagacaactaagtaaacttctgacccctccacacccccaaggtgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaaatgtcacccaagacaactaagtaaacttctgacccctccacacccccaaggtgttt 385

                                                                       
Query: 61  tgctagtataaagaaggatcatttgagaagtggtgaagtgttgggttttgttttgttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgctagtataaagaaggatcatttgagaagtggtgaagtgttgggttttgttttgttttt 325

                                                                       
Query: 121 acaagcctagagtatttgttgtttcaatgtagttgcatttggctaataacaagaatgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acaagcctagagtatttgttgtttcaatgtagttgcatttggctaataacaagaatgctt 265

                                                                       
Query: 181 taataacaagatcaatggactagagagaaaaaatagccatcaagttctgggaagaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taataacaagatcaatggactagagagaaaaaatagccatcaagttctgggaagaaaaaa 205

               
Query: 241 ataa 244
           ||||
Sbjct: 204 ataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)