BAC Information

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BAC

Clone NameMSMg01-450P07
Chromosome6 (Build37)
Map Location 34,570,203 - 34,738,198
singlet/doubletdoublet
Overlap geneLOC100039184, Cald1, Agbl3
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
Downstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450P07.T7 (MSMg01no450_p07.b1)MSMg01-450P07.TJ (MSMg01no450_p07.g1)
ACCAG538559AG538560
length764786
length of high quality
(start - end)
244 (76 - 319)419 (80 - 498)
definitionCHROMAT_FILE: MSMg01no450_p07.b1 PHD_FILE: MSMg01no450_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:03 2005CHROMAT_FILE: MSMg01no450_p07.g1 PHD_FILE: MSMg01no450_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,737,955 - 34,738,198)(34,570,203 - 34,570,617)
sequence
TTCTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAGAGGAT
CCGCGGAATTCAGCTATCCCTAAAACAGGAGTTTGGTAAGCAAATATATT
TAGAATTATTAGACGCCAGAAATATAACTGTTCTAATCTGAAAGGATAAA
ACTGGAAGTATTATCAAGTAACCAGAATGTACAGACTTCCTCCATCCTGA
GGCACTGATGTTAATCACTAAGGACCAAATAAAGGTTGAGAATGCGTGCT
AGAATCGCAAGAACAAGATGCACCAAGGATGTAAAAGTGAGCTGTCCAGC
TAGAGAGAGGCAAAGTTGCTTTTTTTATCCAGCAGAGGGTAGAGGTACCG
TGGGAAGCAGTGCTACACTGAGGCGTTATTTCCCTCTTCTCTTTGCGTCT
TCTGTCTTATACTCTCACCATTCTCATAGATGAGAACACAGATAGGTCAC
AGGAGAAGCAGGAGGCGTGTCTCTTCTCCACTTCATTTTCCTTCTCACTG
ATACAGCTACTAAAATGTGTTTATGAATCATATCTAGATTATATCAACTT
CTTCTTGAACCATAATAACGCAATCATTATAGAAGACGAATGATGATAGA
AACTGACAGTTTTCCATGTGGACACCCCTCCTCTCACGATACATTTCATT
CCGCTTTACTCCTCCCGTTCTTTTAGTTGCTGCTTCGCATAATATGTTTC
TTTTTTTTCCTTTTCTTTCCTCTTAGTTTTATCTTTACACCACAACTATT
CCCTCCATTTACCC
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCCAGTGTTGGGGCTCAA
ACATGGCATGGGTGACCACTGATTCCCAAAGAAAGCATGTGGAAGTAAGG
GTTAAAAGACAGGGAAGGATTTTACTTTACACAATAGAGATGAGATTAAG
CATCTCAGCACATCCTCCGGGTATTGACTTGAGCTTTAGGAGGAACTGGG
TCAAGGGGCAAGACATAAGCCTTATTAAGTAGTTTTGGTCAGGGTGTGGT
CTGGTTGATCATTATCTCAGTTCTGGTTCTGCAAGATGGCTTGAAGAAGT
CCTTATTGCTTGAGGGGAAAATCCAGTTGCCATGAGATGATTGCTTCTGC
TTGGAAGTGACCTCATCCTGGGTGGCCTGCTGTGTCTTGGATTCCAAGGT
GACTGCAGGCTTAGGAGAGTGAATAGAGACATTTTTGGGGGGGGGGTTGN
NNNCNNNNNTTTNNNNNCTGTTTTTNTTTTTTGTTTTTCGTTGTTTTGGT
TTTTGGCTTNGTCGTCTCGCTTGTTTTCTCCCCCTTTTCTCTCCTTTTTT
CTTTTCTTGTTTTCCTTTTCCTCTCCTCTTTTTCTCTCTTTTTTTTTTCC
TTCTTTTTTTTTTTTTTTTTTTCTTCTTTTTTTTCTTCCTTTTCCTTTTT
TTTCTGCTTCTCTTTCTTCCTTTCTCTCTCTTTTTTTTCCCTCTTTCCCC
CGTTTCTTTCTTCCCTTTGCTCTCCCCTTTTCTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_p07.b1 MSMg01no450_p07.b1 CHROMAT_FILE:
MSMg01no450_p07.b1 PHD_FILE: MSMg01no450_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:03 2005
         (244 letters)



>mm_chr6_34737755_34738398
          Length = 644

 Score =  449 bits (232), Expect = e-131
 Identities = 241/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggagtttggtaagcaaatatatttagaattattagacgccagaaatataactgttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caggagtttggtaagcaaatatatttagaattattagacgccagaaatataactgttcta 385

                                                                       
Query: 61  atctgaaaggataaaactggaagtattatcaagtaaccagaatgtacagacttcctccat 120
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 atctgaaaggataaaactggaagtattatcaagtaaccagaatgtagagacttcctccat 325

                                                                       
Query: 121 cctgaggcactgatgttaatcactaaggaccaaataaaggttgagaatgcgtgctagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 324 cctgaggcactgatgttaatcactaaggaccaaataaaggttgagaatgcgtgctagaaa 265

                                                                       
Query: 181 cgcaagaacaagatgcaccaaggatgtaaaagtgagctgtccagctagagagaggcaaag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cgcaagaacaagatgcatcaaggatgtaaaagtgagctgtccagctagagagaggcaaag 205

               
Query: 241 ttgc 244
           ||||
Sbjct: 204 ttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no450_p07.g1 MSMg01no450_p07.g1 CHROMAT_FILE:
MSMg01no450_p07.g1 PHD_FILE: MSMg01no450_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:03 2005
         (419 letters)



>mm_chr6_34570003_34570821
          Length = 819

 Score =  779 bits (403), Expect = 0.0
 Identities = 413/417 (99%), Gaps = 2/417 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggccagtgttggggctcaaacatggcatgggtgaccactgattcccaaagaaagcatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggccagtgttggggctcaaacatggcatgggtgaccactgattcccaaagaaagcatg 260

                                                                       
Query: 61  tggaagtaagggttaaaagacagggaaggattttactttacacaatagagatgagattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaagtaagggttaaaagacagggaaggattttactttacacaatagagatgagattaa 320

                                                                       
Query: 121 gcatctcagcacatcctccgggtattgacttgagctttaggaggaactgggtcaaggggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatctcagcacatcctccgggtattgacttgagctttaggaggaactgggtcaaggggc 380

                                                                       
Query: 181 aagacataagccttattaagtagttttggtcagggtgtggtctggttgatcattatctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagacataagccttattaagtagttttggtcagggtgtggtctggttgatcattatctca 440

                                                                       
Query: 241 gttctggttctgcaagatggcttgaagaagtccttattgcttgaggggaaaatccagttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| 
Sbjct: 441 gttctggttctgcaagatggcttgaagaagtccttattgcttgaggggacaatccagtta 500

                                                                       
Query: 301 ccatgagatgattgcttctgcttggaagtgacctcatcctgggtggcctgctgtgtcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccatgagatgattgcttctgcttggaagtgacctcatcctgggtggcctgctgtgtcttg 560

                                                                    
Query: 361 gattccaaggtgactgcaggcttaggagagtgaatagagacatttttgggggggggg 417
           |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 561 gattccaaggtgactgcaggcttaggagagtgaatagagacattt--gggggggggg 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 819
Length adjustment: 9
Effective length of query: 410
Effective length of database: 810
Effective search space:   332100
Effective search space used:   332100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)