BAC Information

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BAC

Clone NameMSMg01-452A02
Chromosome6 (Build37)
Map Location 93,108,537 - 93,109,227
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2c2, Mrps25, Zfyve20, Trh, LOC665805, Prickle2, LOC545866, A730049H05Rik, LOC384461
Downstream geneLOC100043253, LOC665831, Magi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452A02.T7 (MSMg01no452_a02.b1)MSMg01-452A02.TJ (MSMg01no452_a02.g1)
ACCAG539361AG539362
length751673
length of high quality
(start - end)
695 (55 - 749)---
definitionCHROMAT_FILE: MSMg01no452_a02.b1 PHD_FILE: MSMg01no452_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:26 2005CHROMAT_FILE: MSMg01no452_a02.g1 PHD_FILE: MSMg01no452_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGGTTCTTNNNNNTTTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTCCTTTGGAGATTCCCAAACTTTGGCTTAAAGTAC
TCACTCAGTGGTTCCTGTCTCATAGTCCATAACTTTAGTACATTTGTTCA
GTCTCCAGTTTTGAGATTGTGCCTTACAAGGCTTAGCATAGGACCTCAGA
AAACAGGAAAAGTTAAGTCCATGGGGATTGTGATGGATCCATCTACTCTA
GAGCCAGCATGAGGAGACCATTCCTAGAACTCCTAAGGCTTTCTTGGGAA
AAGCCAGCAGAGTCGCTTTTCAGAATCCTGGCAGTCAACCAATTATATTG
AAAGTTGTTCAGTAAGGGAGGTATGGGAGTGGCTTAGGACTCTGAAGCAT
TAGGAAGATGCCCAGAGACTGACAAGCTCAGTATTCCTGAAGATCTCTTG
GGCTGGAGATACAGGAACAGGTATATTGGTAAAGGTTTTCAGAATTTGTG
GACGCAGAAAAGCCTGCAATGATTCCTGGCTTTCTGGCTAATGTCTGGCT
CTAGTAAACCCAACCTGAAGTTAGTTAATCCCAGAGCATCAAAAATGCAT
TTTACAAGGGTGGGTCCCCTAGGGCAGAGAGGTTTCCAGAGAAAGAAGGA
TAAGAAGGAATTGAATTTTTAAAATACAGAGTCATAAATATGAGACTATT
TGTGGCCTCTTTGCTTTTGATGGTTGAAATCCTCATAGCCTTCTGTCCTT
N
CCATATTCACGATGATAGTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTTCTCGCGAGAAGAATTTCTNTCC
ATNCTTGGTCTTCAGNAAGCTTATCNNTAAGAAGTCTGGGCTTTCCTGNA
GGCTTTCATCTTAGNTGGAACGAAGGTTATTCTTCCCTTAGAAGNACCCT
CCCGCTAAATTGATCNTTNNTTTTCTTTTTCCTTTTTTTTCCTTTTTCCC
TTTCCCTTCCTAAATCCTCCTTCCCCCCAGGGTATTTCTTTACCTTGACC
TAAAATTTTTCCTTGGGNTTCAAAAACCTTTGAAATGCCCCGGAAACCTT
ATTCGGGGCCCAAAAATTCCCCTTTGGGCCCCAACCTCCCCTCCCCCCCT
TTTTTTTTTTAGAAAAATTGGGTCCGGAATTTTCTCTCCTCAAAAATTTT
CCCCCCCCTTTTTTTTAATCCCCTTTTAAAAAAGGTGGGAGAGAAAGAAG
AACAAGAGTGTGTTCTTTCTTCTTCTCTTAAAAAAAAATTTTTCGCGGGC
CCCACAACTTCTTTTTTTGTGAGAAGGATTTTTTTCCCCCCCTATTTTTT
TCCCGAAAAAAAGAGGTTTTTTTGTTTTTTTTCTTTCTTAAAAAAAAGAG
ATCTCAATCGGCACCTTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_a02.b1 MSMg01no452_a02.b1 CHROMAT_FILE:
MSMg01no452_a02.b1 PHD_FILE: MSMg01no452_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:26 2005
         (695 letters)



>mm_chr6_93108333_93109427
          Length = 1095

 Score = 1259 bits (651), Expect = 0.0
 Identities = 681/691 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcctttggagattcccaaactttggcttaaagtactcactcagtggttcctgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcctttggagattcccaaactttggcttaaagtactcactcagtggttcctgt 264

                                                                       
Query: 65  ctcatagtccataactttagtacatttgttcagtctccagttttgagattgtgccttaca 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 ctcatagtccataactttagtacatttgttcagtctccagttctgagattgtgccttaca 324

                                                                       
Query: 125 aggcttagcataggacctcagaaaacaggaaaagttaagtccatggggattgtgatggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggcttagcataggacctcagaaaacaggaaaagttaagtccatggggattgtgatggat 384

                                                                       
Query: 185 ccatctactctagagccagcatgaggagaccattcctagaactcctaaggctttcttggg 244
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 385 ccatctactctagagccagcatgaggagaccatttttagaactcctaaggctttcttggg 444

                                                                       
Query: 245 aaaagccagcagagtcgcttttcagaatcctggcagtcaaccaattatattgaaagttgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaagccagcagagtcgcttttcagaatcctggcagtcaaccaattatattgaaagttgt 504

                                                                       
Query: 305 tcagtaagggaggtatgggagtggcttaggactctgaagcattaggaagatgcccagaga 364
           |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct: 505 tcagtaagggaggtatgggagtggcttaggacactggagcattaggaagatgcccagaga 564

                                                                       
Query: 365 ctgacaagctcagtattcctgaagatctcttgggctggagatacaggaacaggtatattg 424
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 565 ctgacaagctcagtattcctgaagatctcttgggctggagatatagggacaggtatattg 624

                                                                       
Query: 425 gtaaaggttttcagaatttgtggacgcagaaaagcctgcaatgattcctggctttctggc 484
           ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 625 gtaaaggttttcagaatttgtggacacagaaaagcctgcaattattcctggctttctggc 684

                                                                       
Query: 485 taatgtctggctctagtaaacccaacctgaagttagttaatcccagagcatcaaaaatgc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taatgtctggctctagtaaacccaacctgaagttagttaatcccagagcatcaaaaatgc 744

                                                                       
Query: 545 attttacaagggtgggtcccctagggcagagaggtttccagagaaagaaggataagaagg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 attttacaagggtgggtcccctagggcagagaggtttccagagaaagaaggataagaagg 804

                                                                       
Query: 605 aattgaatttttaaaatacagagtcataaatatgagactatttgtggcctctttgctttt 664
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 805 aattgaatttttaaaatacagagtcataaatatgagactatttgtggcctctctgctttt 864

                                          
Query: 665 gatggttgaaatcctcatagccttctgtcct 695
           |||||||||||||||||||||||||||||||
Sbjct: 865 gatggttgaaatcctcatagccttctgtcct 895


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1095
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1085
Effective search space:   743225
Effective search space used:   743225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)