BAC Information

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BAC

Clone NameMSMg01-452L11
Chromosome6 (Build37)
Map Location 62,991,115 - 62,991,641
singlet/doubletsinglet
Overlap genenone
Upstream geneC130092O11Rik, GA_x5J8B7W6GG0-4757855-4757501
Downstream geneLOC667099, Grid2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452L11.T7 (MSMg01no452_l11.b1)MSMg01-452L11.TJ (MSMg01no452_l11.g1)
ACCAG539902AG539903
length763755
length of high quality
(start - end)		606 (72 - 677)678 (78 - 755)
definitionCHROMAT_FILE: MSMg01no452_l11.b1 PHD_FILE: MSMg01no452_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:21 2005CHROMAT_FILE: MSMg01no452_l11.g1 PHD_FILE: MSMg01no452_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATAAAATTGATTTTCTGGGATTTTAGATAAATGAATTGGTCTGTT
AAAAAGATACAATTTGCAAAACACAAGAAAAATCAAGAAGAAGGAAGACC
AACGCATGGATACTTCATTCCTCCCTAGAATAGGGAATAAAATACCCATG
GAAGGAGTTACAGAGACAAAGTTTAGAGCTAAGACAAAAGGATGGACCAA
GAAGTGGGAGTTAGTGGGTAGGGGAGCAGGGTGAGGGGAGGGTATAGAGG
ACTTTAGGGATAGCATTTGAAATATAAATGAAGAAAATATCTAATAAAAA
TAGTGAATAATGCAAAAACAGTTGGGACAAGAAACCACTTATTCTATCTC
ATGTTTAGTTTCTAGATTTGTATCTTTAGGATTTGTGTTTAATTTGGAGT
AGCTATTGAAATAGACAAAACTAAAATGAGTACAATGAAGAGAGAGATGC
CTTAAAAAGGGAAGGTAGCACACTGTAAATAATATGAAAGTACAGAAGGG
GCAAAATGGGAAGTGGCAATACTTAATCAGGGAGAAGGTGGGAGACTAGG
TGAGATAAAGGAGCATGAGGAGGACAAAGCAAAGCAAAGACTGCATGAAA
AACTACTGCTTTATAATCTATTTAAAAGTATGAGTTTAGAATATCTTATA
TGGAGATATCTTTCATGAATATTAACTAACAATGCATGTACTTAAGCAAA
AATCATCATCTCN

NCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTACC
ATGAATGGGTGTTGGATCTTGTCAAGTGCTTGTTCAGTTTCCACGTGAGT
GTTGACTTTCTGCTATTTTTTTTGTTATTGAAGATCAGCCTTAGTGCATG
GTGATCTGATAGGATACATGGGACAATTTCAATATTTTTGAATCTGTTGT
GGCCTGTTTTGTGACCTATTATGTGGTCAATTTTGGAGAAGGTACCATGA
GGTGCTGAGAAGAAGGTATATCCTTTTGTTTTAGGATAAAATGTTCTGTA
GATATCTGTCAGATCCATTTGTTTCTTCACTTGTGTTAGTTTCAGTGTGT
CCCTATTTAGTTTCTGTTTCCATTATCTGTCCATTGGTGAACGTGGTGTT
TTGAAGTCTCCCACTATTATTGTGTGAGGTGCAATGTGTGCTTTGAGCTT
TACTAAAGTTTCTTTAATGAATGTGGCTGCCCTTGTATTTGGAGCATAGA
TATTCAGAATTGAGAGTTCCTCTTGGACGGTTTTACCTTTGATGAGAACG
AAGTGCCCCTCCTTGTCTTTTTTGATGACTTTGGGTTGGAAGTCAGTCCT
ATCAGATATTAGCATGGCTAATCCAGCTTGTTTCTTCATACCATTTGCTT
GGAAAATTGTTTTCCAGCCTTTTATTCTGAGGTAGTGTCTATCTTTTTCT
CTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_l11.b1 MSMg01no452_l11.b1 CHROMAT_FILE:
MSMg01no452_l11.b1 PHD_FILE: MSMg01no452_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:21 2005
         (606 letters)



>mm_chr6_62990636_62991641
          Length = 1006

 Score =  988 bits (511), Expect = 0.0
 Identities = 523/527 (99%)
 Strand = Plus / Minus

                                                                        
Query: 80   aacgcatggatacttcattcctccctagaatagggaataaaatacccatggaaggagtta 139
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 aacgcatggatactttattcctccctagaatagggaataaaatacccatggaaggagtta 947

                                                                        
Query: 140  cagagacaaagtttagagctaagacaaaaggatggaccaagaagtgggagttagtgggta 199
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946  cagagacaaagtttagagctaagacaaaaggatggaccaagaagtgggagttagtgggta 887

                                                                        
Query: 200  ggggagcagggtgaggggagggtatagaggactttagggatagcatttgaaatataaatg 259
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886  ggggagcagggtgaggggagggtatagaggactttagggatagcatttgaaatataaatg 827

                                                                        
Query: 260  aagaaaatatctaataaaaatagtgaataatgcaaaaacagttgggacaagaaaccactt 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826  aagaaaatatctaataaaaatagtgaataatgcaaaaacagttgggacaagaaaccactt 767

                                                                        
Query: 320  attctatctcatgtttagtttctagatttgtatctttaggatttgtgtttaatttggagt 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 766  attctatctcatgtttagtttctagatttgtatctttaggatttgtgtttaatttagagt 707

                                                                        
Query: 380  agctattgaaatagacaaaactaaaatgagtacaatgaagagagagatgccttaaaaagg 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706  agctattgaaatagacaaaactaaaatgagtacaatgaagagagagatgccttaaaaagg 647

                                                                        
Query: 440  gaaggtagcacactgtaaataatatgaaagtacagaaggggcaaaatgggaagtggcaat 499
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 646  gaaggtagcacactgtaaataatatgaaaatacagaaggggcaaaatgggaagtggcaac 587

                                                                        
Query: 500  acttaatcagggagaaggtgggagactaggtgagataaaggagcatgaggaggacaaagc 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586  acttaatcagggagaaggtgggagactaggtgagataaaggagcatgaggaggacaaagc 527

                                                           
Query: 560  aaagcaaagactgcatgaaaaactactgctttataatctatttaaaa 606
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526  aaagcaaagactgcatgaaaaactactgctttataatctatttaaaa 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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