Query= MSMg01no452_n21.b1 MSMg01no452_n21.b1 CHROMAT_FILE:
MSMg01no452_n21.b1 PHD_FILE: MSMg01no452_n21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:34 2005
(657 letters)
>mm_chr6_49801652_49802711
Length = 1060
Score = 1133 bits (586), Expect = 0.0
Identities = 642/670 (95%), Gaps = 19/670 (2%)
Strand = Plus / Minus
Query: 6 aattcagcatcatttacggctaactggcagtcactggagtcttccaccattttaatactg 65
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 686 aattcagcatcatttacgactaactggcagtcgctggagtcttccaccattttaatactg 627
Query: 66 agtcctttgccagttccagtgctgcagaagtctctaggcttcgtataagtcatatattgc 125
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 626 agtcctttgccagttccagtgctgcagaagtttctaggcttcgtataagtcatatgttgc 567
Query: 126 ctgtgatttccttcccatcccacactcttcaccctctctgttgtcttttttgataaacta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ctgtgatttccttcccatcccacactcttcaccctctctgttgtcttttttgataaacta 507
Query: 186 atcttcgtgtagctc-atttttttcagggttttctcttgtcgatgcttttgtacctttgg 244
||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 atcttcgtgtagctcgttttttttcagggttttctcttgttgatgcttttgtacctttgg 447
Query: 245 aatcttcggtta-tttaaaatttcacaaaatactttctggtgtcagctaatatcatctca 303
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aatcttcggttattttaaaa-ttcacaaaatactttctggtgtcagctaatatcatctca 388
Query: 304 gctttacctttcatgaccagacacaccaaattccttggaactgacccggcagggtgctac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctttacctttcatgaccagacacaccaaattccttggaactgacccggcagggtgctac 328
Query: 364 aggggagtatttcacaagattgatcagggtttggaggtgccacggtgaggtggaacctta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggggagtatttcacaagattgatcagggtttggaggtgccacggtgaggtggaacctta 268
Query: 424 ctttctgttccttaaaaattttatttcgtattagaag--acatattacaggtggatttag 481
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 267 ctttctgttccttaaaaattttatttcgtattagaagacacatattacaggtgaatttag 208
Query: 482 ag--------------ctctctctctctctctctctctctctctctctctctctctctct 527
|| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 agctctctctctctctctctctctctctctctctctctctctctctctctctctctctct 148
Query: 528 ctctgactagactgagataaagtctggctatgtagccacattggtctccagttagtcata 587
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 ctctgactagactgagacaaagtctggctatgtagccacattggtctccagttagtcata 88
Query: 588 tagtctaggccagctttgaatttatgatcctgagattttacacgtgtatgctaccaagcc 647
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 87 tagtctaggccagctttgaatttatgatcctgagattttatacgtgtatgctaccaagcc 28
Query: 648 catctggaaa 657
||||||||||
Sbjct: 27 catctggaaa 18
Score = 68.4 bits (35), Expect = 2e-15
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 494 ctctctctctctctctctctctctctctctctctctctg 532
|||||||||||||||||||||||||||||||||| ||||
Sbjct: 895 ctctctctctctctctctctctctctctctctctttctg 857
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 492 ctctctctctctctctctctctctctctctctct 525
||||||||||||||||||||||||||||||||||
Sbjct: 895 ctctctctctctctctctctctctctctctctct 862
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 490 ctctctctctctctctctctctctctctctctct 523
||||||||||||||||||||||||||||||||||
Sbjct: 895 ctctctctctctctctctctctctctctctctct 862
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 488 ctctctctctctctctctctctctctctctctct 521
||||||||||||||||||||||||||||||||||
Sbjct: 895 ctctctctctctctctctctctctctctctctct 862
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 486 ctctctctctctctctctctctctctctctctct 519
||||||||||||||||||||||||||||||||||
Sbjct: 895 ctctctctctctctctctctctctctctctctct 862
Score = 66.5 bits (34), Expect = 7e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 484 ctctctctctctctctctctctctctctctctct 517
||||||||||||||||||||||||||||||||||
Sbjct: 895 ctctctctctctctctctctctctctctctctct 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 123
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 9
Length of query: 657
Length of database: 1060
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1050
Effective search space: 679350
Effective search space used: 679350
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_n21.g1 MSMg01no452_n21.g1 CHROMAT_FILE:
MSMg01no452_n21.g1 PHD_FILE: MSMg01no452_n21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:34 2005
(559 letters)
>mm_chr6_49631707_49632665
Length = 959
Score = 1019 bits (527), Expect = 0.0
Identities = 551/559 (98%)
Strand = Plus / Plus
Query: 1 agaaggatctgaacttctgtgatgtaagggtggagggggacaaccttttctgacatcata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct: 201 agaaggatctgaacttctgtgatgtaagggtggagggggacaaccttttctgatatctta 260
Query: 61 attaactcatgatgtatccagaagggcaaaaaggcttaatatttggagaaggttgaaatc 120
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 261 attaactcatgatgtatccagaagggcaaaaagacttaatatttgaagaaggttgaaatc 320
Query: 121 caggaaagcatatttgaattgtggacaattagttcaaattaaactgagaaacaatttaac 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaaaacatatttgaattgtggacaattagttcaaattaaactgagaaacaatttaac 380
Query: 181 atttaaatgattaaacatttaagtgtatgcatttagtatattaatgtatgcttcattagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttaaatgattaaacatttaagtgtatgcatttagtatattaatgtatgcttcattagc 440
Query: 241 atcataactaatgaagctgttgattgtcatgcaaaggttttttttttccttaaactatta 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atcagaactaatgaagctgttgattgtcatgcaaaggttttttttttccttaaactatta 500
Query: 301 ggaattttaatttgtctaccagttttatggtgttcttggctttctttgtctatgtaaatc 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaattttaatttgcctaccagttttatggtgttcttggctttctttgtctatgtaaatc 560
Query: 361 atttgcattttaatttgggccatatgattttataggcttaatttatctccctcatttcta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttgcattttaatttgggccatatgattttataggcttaatttatctccctcatttcta 620
Query: 421 tattaataggatattttcattgagtatataatttaatccaactagaagtctgtaagaaaa 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattaataggatattttcattaagtatataatttaatccaactagaagtctgtaagaaaa 680
Query: 481 gaaaaacatgcttgcattgtttgatctttaaaatctaaatgcagaagttgcctttgattt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaaaaacatgcttgcattgtttgatctttaaaatctaaatgcagaagttgcctttgattt 740
Query: 541 cttctttgtgcatgagaga 559
|||||||||||||||||||
Sbjct: 741 cttctttgtgcatgagaga 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
