BAC Information

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BAC

Clone NameMSMg01-452P02
Chromosome6 (Build37)
Map Location 32,321,233 - 32,321,708
singlet/doubletsinglet
Overlap genePlxna4
Upstream geneMkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452P02.T7 (MSMg01no452_p02.b1)MSMg01-452P02.TJ (MSMg01no452_p02.g1)
ACCAG540075AG540076
length763760
length of high quality
(start - end)
623 (39 - 661)472 (74 - 545)
definitionCHROMAT_FILE: MSMg01no452_p02.b1 PHD_FILE: MSMg01no452_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:39 2005CHROMAT_FILE: MSMg01no452_p02.g1 PHD_FILE: MSMg01no452_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGA
ATTCTGGGTGTTTCTAGCACTGCTTACCCATGTTTCAAGACATGACTTCA
CCCCAGCCTTGGTTCTGAGCTCACCATATGTGCACACACCTTCACGCCAC
ACAGTGCTATGCCCACAGATGATGTCCGCAACACCTTGACTCAGATTTGA
AACTGTTCTATGGTATAGATTCTAGCACATACCAAACTTACCACTTCTTA
GGAAACGTAATAATTTAATTACAGAAAACAAAGACCTACTGTTTTCCTTC
CATCATCCCTCAACATTTAAATATCAAATTAGTATATTGTTGGATTGAAC
TACATTAAACAAATGAGCACACCAGTTCATTAGTAATACATTTCTTTTAT
CTTATGATTGGTAAAATTGCACATATGTTAAAGAACTCTTTTAAAGTTTT
TGTAAATGATTTATTATCAGTAAATATTTGATTTGTATGCCTATTTTTAT
ATACTATAGTCCTGTATCATGCAAACACTTCTTCATTAAGATAGAGTCAT
TAGTGAAAAAAAATTTAAGATGCTCTGTGCTGAGGGGACATGCCTAGCAC
CTGGTGAGGCTCATACATTGTAGGTGCTCACTCATGTTCCAAGTAGTCTT
GCAGGTGGCTCTACTCCACAATGCTTGTAATCTGTTAAAAGTCTGAACAG
ATACAAGCAATGGAAAGTGTGACCTTGTCCCTACTCCTGCCCTGGCAGCT
CCTGCTCACACTN
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXGCAGTGGAGTGGGAAGGAGGCGGGGACAGT
GGAGTTTGGAGAGGGGTCTGTCAGCTGCAGAGTGGCTGAGCCAGCAGGCA
GTTATTCGCTGAGAAGAAAAAAACCATATCTCTCTTGTCCTCACTTTCTC
CTTTTGTTGGAAGGATATTTTATCCTACCCACATTAATGATGAAGAAGAA
GAAGGGGGAAAGACAATAAAAAATGGGATGAGTGTGGAGGAAAGTGGGAG
CATTTGGAAAGGAAGCATGTGAGGCCAGAAGTTAGTTTAAATGAATCATC
TCTCTGCCTCCCTGAATATTTTGATTAAAGCCATAGGACCTCAATCAAAG
CCACTGAAAGGAAATACCCCCATGTCTGAGAACAATTTTGTTTGCTGGAA
TTTTCCCTCCTGTGTTCTATTATGATGGGGGGTGGTGAAGAACAAAAAGA
GAGTTGGTTGTATGTGGTCCTCCTTTGATCTTTCAAAGGAAAGAAGGACA
TTAAAAAAGAGAAGGAGAAATTGACACCTATTTTGTCCCTTCTTTCCTTG
AATGGTATCTATAGCGCAACAGGATCTGAACAGATATTCTGCAGCTCCCA
GTCTAGGTTGATGGTGAATATAATCCATTTAGAGAATGTGGCTTGTGAAT
TCCCAAGATCCCCTGAAGGGTCCTCTCTTGGAGATAAGCCTTGTCCTCTC
CCTGGATCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_p02.g1 MSMg01no452_p02.g1 CHROMAT_FILE:
MSMg01no452_p02.g1 PHD_FILE: MSMg01no452_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:39 2005
         (472 letters)



>mm_chr6_32321033_32321908
          Length = 876

 Score =  822 bits (425), Expect = 0.0
 Identities = 462/481 (96%), Gaps = 14/481 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggagtgggaaggaggcggggacagtggagtttggagaggggtctgtcagctgcagagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggagtgggaaggaggcggggacagtggagtttggagaggggtctgtcagctgcagagt 260

                                                                       
Query: 61  ggctgagccagcaggcagttattcgctgagaag-aaaaaaaccatatctctcttgtcctc 119
           ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 261 ggctgagccagcaggcagttattcggtgagaagaaaaaaaaccatatctctcttgtcctc 320

                                                                       
Query: 120 actttctccttttgttggaaggatattttatcctacccacattaatgat---gaagaaga 176
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 321 actttctccttttgttggaaggatattttatcctacccacattaatgatgaagaagaaga 380

                                                                       
Query: 177 agaagggggaaagacaataaaaaatgggatgagtgtggaggaaagtgggagcatttggaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaagggggaaagacaataaaaaatgggatgagtgtggaggaaagtgggagcatttggaa 440

                                                                       
Query: 237 aggaagcatgtgaggccagaagttagtttaaatgaatcatctctctgcctccctgaatat 296
           |||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggaagcgcgtgaggccaggagttagtttaaatgaatcatctctctgcctccctgaatat 500

                                                                       
Query: 297 tttgattaaagccataggacctcaatcaaagccactgaaaggaaataccccca-----tg 351
           |||||||||||||||||||||||||||||||||||||||||||||||     |     ||
Sbjct: 501 tttgattaaagccataggacctcaatcaaagccactgaaaggaaata-----aaaagatg 555

                                                                       
Query: 352 tctgagaacaattttgtttgctggaattttccctcctgtgttctattatgatggggggtg 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 556 tctgagaacaattttgtttgctggaattttccctcctgtgttctattatgatgggggatg 615

                                                                       
Query: 412 gtgaagaacaaaaagagagttggttgtatgtggtcctcctttgatctttcaaaggaaaga 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 gtgaagaacaaaaagagagttggttgtatgtggtcctcctttgatctttcaaaggaaaga 675

            
Query: 472 a 472
           |
Sbjct: 676 a 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 876
Length adjustment: 10
Effective length of query: 462
Effective length of database: 866
Effective search space:   400092
Effective search space used:   400092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)