BAC Information

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BAC

Clone NameMSMg01-452P07
Chromosome6 (Build37)
Map Location 18,493,128 - 18,525,089
singlet/doubletdoublet
Overlap genenone
Upstream geneMet, Capza2, St7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452P07.T7 (MSMg01no452_p07.b1)MSMg01-452P07.TJ (MSMg01no452_p07.g1)
ACCAG540085AG540086
length751747
length of high quality
(start - end)		631 (51 - 681)659 (89 - 747)
definitionCHROMAT_FILE: MSMg01no452_p07.b1 PHD_FILE: MSMg01no452_p07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:40 2005CHROMAT_FILE: MSMg01no452_p07.g1 PHD_FILE: MSMg01no452_p07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,524,461 - 18,525,089)(18,493,128 - 18,493,786)
sequence
NNNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGGGCCAGCCTGACCTACAAAGCTACAAAATGAGTCTAGG
AATGCCAATGGTATTACATAGAGAAATCCTGCCTTGAAAAACCAAACCAA
ACAAAGAATAAAATAAATGCCAAGTGTCACTAACCTTTGGATTAACATAC
AAGTGTGGTTTGAGCTTCCAATGCCCATTGTTTGGGATTCTCAGAAGAAC
ACCAGTAGCCTGGTCTCCTCTAACAAATTCCTAGACTGTGTAAACTATTA
TTAATGTGTGTGTCATTTCCACCTAAGATGGAATAATTGCTATCTCCCAG
AGTATCATAAAAGTCATTTTCCTAAATGCTAAAAGGTCAGGACTGAACTT
TTGCATACTCACACGCAATCATGGAAAGCAAAGTTCTTTTCTATAGAACT
CCAAAGAGCTTTGTAAGTCCCACAAGTTCTGAAATTAGACAAAGTTGAGT
ATCTTTCAGTGAATACCAAAGAAATATTGGACAAAAGACATTCTTCAGGT
AATCTAAGGGGTGAGGACACGATTCAGTCAGTAACGTGCTTGCTTTGCAA
GCACAAAGACTTTAGATCTATTCTCAATGGCCGCACAAGCATCCGGTATG
GCGGTTCATGCTTGTTATTCCAATTCTGTGAGGGCAGAGACAGGAAGATC
CTTGAGGTTCATTAGTTAGGCAGCCTCTCCTCATTGGTGAGTTCTAACCT
C

NNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAATGGTAGCA
ATGGTCAGAAGTCACAGATTACAGTGTCTATGGCCTTACCTTTAGCCATT
TATAAAGGCAGAGCCAATACACATCTGCCATGTCTACCTGTCTACCCTAA
ACACACCACTCATTCATCACAGTATTCTCTTGTCAGTGATTCCAGGCTTG
GTCACCCTTAAATAAGCATGGAAGGAATCAGTCTAGGGAGCAGTTTGTCA
AGAGATTAACAAACATTTCATATCTCATTTCACCACTCACACATCCTTCA
ATAGCTTTTTAGAGATCTGTAGTTGGTATGCTTTTATTGTATGACCACAG
AAAGATTCAGATACTCGGTATCCCAATAGGAACATGAACAGGAATGAATA
GAAGCCCTGTCTTAAGCTGATGAGGACACTGGCATTTCTAGCTGAGAATG
TTTTCTTTCTAATAAGACTGATAAGAGGCCAATGTGGATGTGATCTCCTG
GGGTGACTTTATACTGCCACCCGCTCATCATCTCTTCCATCCTTCTGTCT
TATTTTTCTCATAGCTTTTGATACAATTTGTGTGTTTGTTTCTCAGTCTC
CTGAAAGAGCATTAAGTTTTACAAGATCGGGAATTTAGTCTATTCTCTGT
CAAAATCCCTGCATCAAATAAAATAGCTTTAAAAATCCCTGCATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_p07.b1 MSMg01no452_p07.b1 CHROMAT_FILE:
MSMg01no452_p07.b1 PHD_FILE: MSMg01no452_p07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:40 2005
         (631 letters)



>mm_chr6_18524289_18525319
          Length = 1031

 Score = 1193 bits (617), Expect = 0.0
 Identities = 626/629 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   cggaattcagggccagcctgacctacaaagctacaaaatgagtctaggaatgccaatggt 62
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 801 cggaattcagggccagcctgacctacaaagctataaaatgagtctaggaatgccaatggt 742

                                                                       
Query: 63  attacatagagaaatcctgccttgaaaaaccaaaccaaacaaagaataaaataaatgcca 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 attacatagagaaatcctgccttgaaaaaccaaaccaaacaaagaataaaataaatgcca 682

                                                                       
Query: 123 agtgtcactaacctttggattaacatacaagtgtggtttgagcttccaatgcccattgtt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agtgtcactaacctttggattaacatacaagtgtggtttgagcttccaatgcccattgtt 622

                                                                       
Query: 183 tgggattctcagaagaacaccagtagcctggtctcctctaacaaattcctagactgtgta 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgggattctcagaagaacaccagtagcctggtctcctctaacaaattcctagactgtgta 562

                                                                       
Query: 243 aactattattaatgtgtgtgtcatttccacctaagatggaataattgctatctcccagag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aactattattaatgtgtgtgtcatttccacctaagatggaataattgctatctcccagag 502

                                                                       
Query: 303 tatcataaaagtcattttcctaaatgctaaaaggtcaggactgaacttttgcatactcac 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatcataaaagtcattttcctaaatgctaaaaggtcaggactgaacttttgcatactcac 442

                                                                       
Query: 363 acgcaatcatggaaagcaaagttcttttctatagaactccaaagagctttgtaagtccca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acgcaatcatggaaagcaaagttcttttctatagaactccaaagagctttgtaagtccca 382

                                                                       
Query: 423 caagttctgaaattagacaaagttgagtatctttcagtgaataccaaagaaatattggac 482
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 caagttctgaaattagacaaagttgaatatctttcagtgaataccaaagaaatattggac 322

                                                                       
Query: 483 aaaagacattcttcaggtaatctaaggggtgaggacacgattcagtcagtaacgtgcttg 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagacattcttcaggtaatctaaggggtgaggacacgattcagtcagtaacgtgcttg 262

                                                                       
Query: 543 ctttgcaagcacaaagactttagatctattctcaatggccgcacaagcatccggtatggc 602
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 ctttgcaagcacaaagactttagatctattctcactggccgcacaagcatccggtatggc 202

                                        
Query: 603 ggttcatgcttgttattccaattctgtga 631
           |||||||||||||||||||||||||||||
Sbjct: 201 ggttcatgcttgttattccaattctgtga 173


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_p07.g1 MSMg01no452_p07.g1 CHROMAT_FILE:
MSMg01no452_p07.g1 PHD_FILE: MSMg01no452_p07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:40 2005
         (659 letters)



>mm_chr6_18492928_18493986
          Length = 1059

 Score = 1197 bits (619), Expect = 0.0
 Identities = 649/659 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaatggtagcaatggtcagaagtcacagattacagtgtctatggccttacctttagcca 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatggtagcaatggtcagaagccacagattacagtgtctatggccttacctttagcca 260

                                                                       
Query: 61  tttataaaggcagagccaatacacatctgccatgtctacctgtctaccctaaacacacca 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttataaaggcagagtcaatacacatctgccatgtctacctgtctaccctaaacacacca 320

                                                                       
Query: 121 ctcattcatcacagtattctcttgtcagtgattccaggcttggtcacccttaaataagca 180
           |||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 321 ctcatttatcacagtattctcttgtcagtgattccagacttggtcacccttaaaaaagca 380

                                                                       
Query: 181 tggaaggaatcagtctagggagcagtttgtcaagagattaacaaacatttcatatctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaaggaatcagtctagggagcagtttgtcaagagattaacaaacatttcatatctcat 440

                                                                       
Query: 241 ttcaccactcacacatccttcaatagctttttagagatctgtagttggtatgcttttatt 300
           ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 441 ttcaccactcacacatccttcaatagctttttagagaactgtagttgttatgcttttatt 500

                                                                       
Query: 301 gtatgaccacagaaagattcagatactcggtatcccaataggaacatgaacaggaatgaa 360
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 501 gtatgaccacagaaagattcagatactcggtatctgaataggaacatgaacaggaatgaa 560

                                                                       
Query: 361 tagaagccctgtcttaagctgatgaggacactggcatttctagctgagaatgttttcttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagaagccctgtcttaagctgatgaggacactggcatttctagctgagaatgttttcttt 620

                                                                       
Query: 421 ctaataagactgataagaggccaatgtggatgtgatctcctggggtgactttatactgcc 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaataagcctgataagaggccaatgtggatgtgatctcctggggtgactttatactgcc 680

                                                                       
Query: 481 acccgctcatcatctcttccatccttctgtcttatttttctcatagcttttgatacaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acccgctcatcatctcttccatccttctgtcttatttttctcatagcttttgatacaatt 740

                                                                       
Query: 541 tgtgtgtttgtttctcagtctcctgaaagagcattaagttttacaagatcgggaatttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgtgtgtttgtttctcagtctcctgaaagagcattaagttttacaagatcgggaatttag 800

                                                                      
Query: 601 tctattctctgtcaaaatccctgcatcaaataaaatagctttaaaaatccctgcatcta 659
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctattctctgtcaaaatccctgcatcaaataaaatagctttaaaaatccctgcatcta 859


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 659
Length of database: 1059
Length adjustment: 10
Effective length of query: 649
Effective length of database: 1049
Effective search space:   680801
Effective search space used:   680801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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